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[173661_s_at]

Description C63108 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C54G7.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C63108 /WB_GENE_ID=C54G7.3 /WP=CE04271 /CHR=X /FEA=Genomic Cluster /GEN=lgx-1 /DEF=C.elegans cDNA clone yk322a12 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 90      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 496
1 2 3 4 range
A 96.5
(-3)
A 		392.5
(2.6)
P 		412.5
(3)
P 		156.8
(-1.9)
P 		316
B 114.6
(-2.4)
M 		532.6
(2.8)
P 		546.9
(3)
P 		69.4
(-3)
A 		478
C 103.1
(-3)
A 		565
(3)
P 		407.1
(0.9)
P 		105.4
(-3)
M 		462
avr 104.7
(-3) 		496.7
(3) 		455.5
(2.4) 		110.5
(-2.9) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 242.1
(-2.8)
P 		428.1
(2)
P 		235.3
(-3)
P 		284.8
(-1.7)
P 		466.7
(3)
P 		311.8
(-1)
P 		231
B 154.2
(-3)
P 		337.4
(3)
P 		289.3
(1.4)
P 		316.1
(2.3)
P 		319.4
(2.4)
P 		314.2
(2.2)
P 		183
C 152.3
(-3)
A 		497.3
(3)
P 		304.8
(-0.3)
P 		342.6
(0.3)
P 		314.5
(-0.2)
P 		289.5
(-0.6)
P 		345
avr 182.9
(-3) 		420.9
(3) 		276.5
(-0.6) 		314.5
(0.3) 		366.9
(1.6) 		305.2
(0.1) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 35.1
(-2.1)
A 		85.2
(1.4)
P 		107.8
(3)
P 		22.9
(-3)
P 		85
B 36.5
(-1.9)
M 		131.5
(3)
P 		126.7
(2.8)
P 		14.8
(-3)
A 		117
C 34.1
(-2.3)
A 		162.4
(3)
P 		141.9
(2.1)
P 		17.8
(-3)
M 		145
avr 35.2
(-2.1) 		126.4
(3) 		125.5
(2.9) 		18.5
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 44.6
(-3)
P 		152.3
(3)
P 		51.2
(-2.6)
P 		72.2
(-1.5)
P 		140.8
(2.4)
P 		75.9
(-1.3)
P 		108
B 53.7
(-3)
P 		112.3
(1.6)
P 		70.3
(-1.7)
P 		83.7
(-0.6)
P 		129.8
(3)
P 		117.2
(2)
P 		76
C 56.4
(-3)
A 		151.8
(3)
P 		77.6
(-1.7)
P 		68.9
(-2.2)
P 		101.8
(-0.1)
P 		96.9
(-0.5)
P 		95
avr 51.6
(-3) 		138.8
(3) 		66.4
(-2) 		74.9
(-1.4) 		124.1
(2) 		96.7
(0.1) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173661_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25801
Sequence Type Exemplar sequence
Representative Public ID C63108 NCBI
Target Description C63108 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C54G7.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C63108 /WB_GENE_ID=C54G7.3 /WP=CE04271 /CHR=X /FEA=Genomic Cluster /GEN=lgx-1 /DEF=C.elegans cDNA clone yk322a12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171689 NCBI Caenorhabditis elegans Lin-12 and Glp-1 X-hybridizing family member (lgx-1) (lgx-1) mRNA, complete cds. 11/11 None
SNAP00000026245 ENSEMBL cdna:SNAP chromosome:CEL140:X:5525303:5528555:-1 11/11 None
GENEFINDER00000026250 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5525303:5539457:-1 11/11 None
C54G7.3a ENSEMBL cdna:known chromosome:CEL140:X:5525160:5538421:-1 gene:C54G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180825 2 1 NM_171689 173661_s_at (11)
NM_171690 174256_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5525170-5538422(-) 98.6 100.0
Public Domain and Genome References
Ensembl C54G7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27229 Lin-12 and glp-1 x-hybridizing protein 1, isoform a [Caenorhabditis elegans] ref|NP_741795.1| Lin-12 and Glp-1 X-hybridizing family member (lgx-1) [Caenorhabditis elegans] 0.0
blast T15840 hypothetical protein C54G7.3 - Caenorhabditis elegans 0.0
blast AAL27230 Lin-12 and glp-1 x-hybridizing protein 1, isoform b [Caenorhabditis elegans] ref|NP_741796.1| Lin-12 and Glp-1 X-hybridizing family member (lgx-1) [Caenorhabditis elegans] 0.0
blast CAE68839 Hypothetical protein CBG14800 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.2E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.5E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.5E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.2E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.0E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.1E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 4.7E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.7E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.3E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.3E-6
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.5E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-4
Sequence
Target Sequence 
>C. ELEGANS:173661_S_AT
gtatgctccgagcggctgttgatttgaacaatactgttgatgaattggaagagattataa
cgcgaaatttcgaacgaagctactcagcaaaccgagcgccatatgtattatcgttgaacg
ctgacttccttcaacttggtggacataataagggaatgaaggcggtgcagaagttcttga
atagaatgtcagctcagaaagacgtctacattgttaccatcaaacagttgatcgactgga
tgaagcggccggtgccaattagcgagatgaaaagtgtacgtggaaagtccaaagcagttg
gctgcccaattaccttgtctttcaaccggaacccgtcactatcgacctgcgacataccta
acaaatgcctttacagtacgccgtcgttatccagccaggagcatcagttcttgacatgct
tgccatgcccaactatgtatccgtggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCTCCGAGCGGCTGTTGATTT 578 455 8379 Antisense
CTACTCAGCAAACCGAGCGCCATAT 3 227 8458 Antisense
GCTGACTTCCTTCAACTTGGTGGAC 550 293 8498 Antisense
TGAAGCGGCCGGTGCCAATTAGCGA 582 571 8619 Antisense
AAGCAGTTGGCTGCCCAATTACCTT 119 149 8670 Antisense
TTCAACCGGAACCCGTCACTATCGA 570 683 8699 Antisense
TCACTATCGACCTGCGACATACCTA 69 625 8714 Antisense
TTTACAGTACGCCGTCGTTATCCAG 315 671 8748 Antisense
TCCAGCCAGGAGCATCAGTTCTTGA 342 587 8768 Antisense
CAGTTCTTGACATGCTTGCCATGCC 378 207 8783 Antisense
CATGCCCAACTATGTATCCGTGGCT 591 209 8802 Antisense
Sequence Source Affymetrix Proprietary Database