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[173660_at] casein Kinase I

Description C48059 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R90.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48059 /WB_GENE_ID=R90.1 /WP=CE06325 /CHR=5 /FEA=Genomic Cluster /DEF=casein Kinase I; C.elegans cDNA clone yk454d7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 15      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 20      6grp_total > 05      4grp_total > 23      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 974
1 2 3 4 range
A 1398.2
(3)
P 		638.2
(-3)
P 		770.7
(-2)
P 		1293.2
(2.2)
P 		760
B 1612.1
(3)
P 		768.5
(-2.7)
P 		724.2
(-3)
P 		1271.7
(0.7)
P 		888
C 1252
(3)
P 		900.7
(-2.3)
P 		852.2
(-3)
P 		1173.9
(1.8)
P 		400
avr 1420.8
(3) 		769.1
(-3) 		782.4
(-2.9) 		1246.3
(1.4) 		652

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1079
1 2 3 4 5 6 range
A 1512.4
(3)
P 		1246.3
(0.7)
P 		996
(-1.5)
P 		1008.1
(-1.4)
P 		1227.8
(0.5)
P 		831.1
(-3)
P 		681
B 1650.9
(3)
P 		1295.1
(1)
P 		571.7
(-3)
P 		1173.2
(0.3)
P 		1049.8
(-0.3)
P 		1084.3
(-0.2)
P 		1079
C 1320.8
(2.1)
P 		1416.8
(3)
P 		924.2
(-1.8)
P 		1008.8
(-1)
P 		805.6
(-3)
P 		809.3
(-3)
P 		611
avr 1494.7
(3) 		1319.4
(1.4) 		830.6
(-3) 		1063.4
(-0.9) 		1027.7
(-1.2) 		908.2
(-2.3) 		664
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 509.1
(3)
P 		138.5
(-3)
P 		201.5
(-2)
P 		189.3
(-2.2)
P 		371
B 514.1
(3)
P 		189.8
(-2.6)
P 		167.8
(-3)
P 		271
(-1.2)
P 		346
C 414.5
(3)
P 		258.9
(-1.3)
P 		297
(-0.3)
P 		197.9
(-3)
P 		217
avr 479.2
(3) 		195.7
(-3) 		222.1
(-2.4) 		219.4
(-2.5) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 436
1 2 3 4 5 6 range
A 278.8
(-1.1)
P 		443.2
(3)
P 		216.9
(-2.6)
P 		255.7
(-1.7)
P 		370.5
(1.2)
P 		202.3
(-3)
P 		241
B 574.4
(3)
P 		431.1
(1)
P 		138.8
(-3)
P 		310.7
(-0.6)
P 		426.5
(1)
P 		404.3
(0.7)
P 		436
C 489.6
(3)
P 		432.3
(1.8)
P 		235.2
(-2.3)
P 		202.9
(-3)
P 		260.7
(-1.8)
P 		270.9
(-1.6)
P 		287
avr 447.6
(3) 		435.5
(2.7) 		197
(-3) 		256.4
(-1.6) 		352.6
(0.7) 		292.5
(-0.7) 		251
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25586
Sequence Type Exemplar sequence
Representative Public ID C48059 NCBI
Target Description C48059 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R90.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48059 /WB_GENE_ID=R90.1 /WP=CE06325 /CHR=5 /FEA=Genomic Cluster /DEF=casein Kinase I; C.elegans cDNA clone yk454d7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073823 NCBI Caenorhabditis elegans R90.1 (R90.1) mRNA, complete cds. 11/11 None
R90.1 ENSEMBL cdna:known chromosome:CEL140:V:12894117:12898462:-1 gene:R90.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12894127-12898453(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein Kinase I
Ensembl R90.1
Entrez Gene 179768 Entrez gene
SwissProt Q22033 EMBL-EBI
WormBase CE06325 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99911 Hypothetical protein R90.1 [Caenorhabditis elegans] ref|NP_506224.1| R90.1 [Caenorhabditis elegans] 0.0
blast CAE64723 Hypothetical protein CBG09510 [Caenorhabditis briggsae] 0.0
blast EAA06765 ENSANGP00000017406 [Anopheles gambiae str. PEST] ref|XP_311102.2| ENSANGP00000017406 [Anopheles gambiae str. PEST] 6.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-30
Sequence
Target Sequence 
>C. ELEGANS:173660_AT
aaatcatagccataaccaggtctctttttctttcaattatttttgtccctgtcctctctt
tctctctttcttcttgtcaaccaaagcactgttatgacattttctagtcgaaacctatct
tgtccaaaagccttttttcttttttgtctcataaatataattaacaaaaaaaacataatt
tgaaatctttggtatatgaacaaaactttcattctctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCATAGCCATAACCAGGTCTCT 521 117 2336 Antisense
AGCCATAACCAGGTCTCTTTTTCTT 581 83 2343 Antisense
TAACCAGGTCTCTTTTTCTTTCAAT 344 637 2348 Antisense
TTTCAATTATTTTTGTCCCTGTCCT 412 673 2366 Antisense
TTCTTGTCAACCAAAGCACTGTTAT 293 689 2406 Antisense
GCACTGTTATGACATTTTCTAGTCG 327 315 2421 Antisense
TTCTAGTCGAAACCTATCTTGTCCA 171 691 2437 Antisense
GAAACCTATCTTGTCCAAAAGCCTT 222 359 2445 Antisense
TATCTTGTCCAAAAGCCTTTTTTCT 674 659 2451 Antisense
TTCTTTTTTGTCTCATAAATATAAT 570 689 2472 Antisense
TATGAACAAAACTTTCATTCTCTCT 647 653 2530 Antisense
Sequence Source Affymetrix Proprietary Database