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[173659_s_at] peroxidase

Description C64169 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C46A5.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64169 /WB_GENE_ID=C46A5.4 /WP=CE27858 /CHR=4 /FEA=Genomic Cluster /DEF=peroxidase; C.elegans cDNA clone yk354b12 : 5prime end, single read.
Cluster 6grp_total > 83      4grp_total > 19      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 49.9
(-1.4)
A 		31.7
(-3)
A 		32
(-3)
A 		98.8
(3)
A 		67
B 9.5
(-3)
A 		31.5
(1.7)
A 		12.7
(-2.3)
A 		37.3
(3)
A 		28
C 31.2
(-0.6)
A 		49.5
(1)
A 		3.3
(-3)
A 		72.1
(3)
A 		69
avr 30.2
(-1.4) 		37.6
(-0.6) 		16
(-3) 		69.4
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 946
1 2 3 4 5 6 range
A 117.8
(-2.5)
P 		56.7
(-2.9)
A 		47
(-3)
A 		814.5
(2.1)
P 		958.3
(3)
P 		411.5
(-0.6)
P 		911
B 84.5
(-2.5)
P 		51.4
(-2.7)
A 		12.5
(-3)
A 		774.1
(2.3)
P 		866.8
(3)
P 		366
(-0.5)
P 		854
C 90.8
(-2.5)
P 		79.6
(-2.6)
A 		21.6
(-3)
A 		738.9
(2.1)
P 		869.1
(3)
P 		315
(-0.9)
P 		848
avr 97.7
(-2.5) 		62.6
(-2.8) 		27
(-3) 		775.8
(2.2) 		898.1
(3) 		364.2
(-0.7) 		871
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.2
(3)
A 		6.9
(-3)
A 		8.4
(-2.2)
A 		14.5
(1)
A 		11
B 3
(-2.9)
A 		7.8
(2.8)
A 		2.9
(-3)
A 		8
(3)
A 		5
C 10.3
(1.2)
A 		14.2
(3)
A 		1.1
(-3)
A 		12.2
(2.1)
A 		13
avr 10.5
(2.1) 		9.6
(1.4) 		4.1
(-3) 		11.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 21.7
(-2.8)
P 		20.2
(-2.8)
A 		10.2
(-3)
A 		206.6
(1.2)
P 		289.2
(3)
P 		100.2
(-1.1)
P 		279
B 29.4
(-2.5)
P 		17.1
(-2.8)
A 		3
(-3)
A 		205
(0.5)
P 		352.1
(3)
P 		136.5
(-0.7)
P 		349
C 33.7
(-2.4)
P 		24.3
(-2.6)
A 		5.5
(-3)
A 		148.6
(0.1)
P 		281.2
(3)
P 		105.5
(-0.8)
P 		276
avr 28.3
(-2.6) 		20.5
(-2.7) 		6.2
(-3) 		186.7
(0.6) 		307.5
(3) 		114.1
(-0.9) 		301
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173659_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24562
Sequence Type Exemplar sequence
Representative Public ID C64169 NCBI
Target Description C64169 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C46A5.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C64169 /WB_GENE_ID=C46A5.4 /WP=CE27858 /CHR=4 /FEA=Genomic Cluster /DEF=peroxidase; C.elegans cDNA clone yk354b12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068871 NCBI Caenorhabditis elegans C46A5.4 (peroxidase) mRNA, complete cds. 11/11 None
SNAP00000025528 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7748197:7755928:-1 11/11 None
GENEFINDER00000025539 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7748152:7753113:-1 11/11 None
C46A5.4 ENSEMBL cdna:known chromosome:CEL140:IV:7748140:7755928:-1 gene:C46A5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7748156-7755935(-) 99.51 100.0
Public Domain and Genome References
Gene Title peroxidase
Ensembl C46A5.4
Entrez Gene 177558 Entrez gene
SwissProt Q18647 EMBL-EBI
WormBase CE27858 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03144 Hypothetical protein C46A5.4 [Caenorhabditis elegans] ref|NP_501272.1| C46A5.4 [Caenorhabditis elegans] 0.0
blast CAE70871 Hypothetical protein CBG17660 [Caenorhabditis briggsae] 0.0
blast CAA88973 Hypothetical protein T06D8.10 [Caenorhabditis elegans] emb|CAA88963.1| Hypothetical protein T06D8.10 [Caenorhabditis elegans] ref|NP_496407.1| T06D8.10 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173659_S_AT
atgttgacgacattgacctgttcccgggaatcatgagtgaatctccaactagaggctcac
ttgttggcccaacattagcatgtcttattggtgaacaaatgcaaagattgaaaaaatgcg
acagattttattatgagacaagtgattcaatggttcgatttactccagatcaacttgtcg
aaattcgaaaagccagtttgtcaagaattatttgcgataatagtgaatatgccgcaaata
ttcaacccaatgtgttccttatgccagacgatcttagaaactctccgatgacatgctctg
aactttctgagattgacctgaacaaatgggttgaacgagactattgccttgttgatgaac
gtgtagttaatcgtggaaaaactaaacgaataactccatgtatcacctgtacatgtacat
tagaaggtcctgaatgtcattcaatcacaattgatgattgttctcgtcttcttcgtgatt
actcaatcactgatattcaaaaggatccagtttgcctcattcaatgctctcagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGACGACATTGACCTGTTCCC 31 45 3891 Antisense
GACCTGTTCCCGGGAATCATGAGTG 188 383 3905 Antisense
TAGAGGCTCACTTGTTGGCCCAACA 383 653 3940 Antisense
GGTTCGATTTACTCCAGATCAACTT 276 499 4042 Antisense
AATGTGTTCCTTATGCCAGACGATC 206 163 4139 Antisense
ACTCTCCGATGACATGCTCTGAACT 655 99 4170 Antisense
GAGACTATTGCCTTGTTGATGAACG 337 393 4227 Antisense
GAATAACTCCATGTATCACCTGTAC 519 327 4278 Antisense
AATTGATGATTGTTCTCGTCTTCTT 343 179 4339 Antisense
AAAGGATCCAGTTTGCCTCATTCAA 490 121 4390 Antisense
TTGCCTCATTCAATGCTCTCAGCAA 176 703 4402 Antisense
Sequence Source Affymetrix Proprietary Database