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[173658_at] esterase

Description C35781_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15A8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C35781 /WB_GENE_ID=F15A8.6 /WP=CE09404 /CHR=X /FEA=Genomic Cluster /DEF=esterase; C.elegans cDNA clone yk448e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 758
1 2 3 4 range
A 508.9
(0.1)
P 		386.8
(-1.4)
P 		260.7
(-3)
P 		747.3
(3)
P 		487
B 559.6
(-0.4)
P 		312.3
(-3)
P 		403.3
(-2)
P 		878
(3)
P 		566
C 454.2
(-2.1)
P 		354.7
(-3)
P 		374.4
(-2.8)
P 		1018.9
(3)
P 		664
avr 507.6
(-1.2) 		351.3
(-2.9) 		346.1
(-3) 		881.4
(3) 		535

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 540
1 2 3 4 5 6 range
A 601.7
(2.8)
P 		501.3
(0.8)
P 		312.4
(-3)
P 		402
(-1.2)
P 		613
(3)
P 		452.2
(-0.2)
P 		301
B 821.2
(3)
P 		553.5
(-1.3)
P 		512.8
(-1.9)
P 		447.3
(-3)
P 		678.8
(0.7)
P 		652.2
(0.3)
P 		374
C 611.5
(0.1)
P 		615.8
(0.2)
P 		353.7
(-3)
P 		476.4
(-1.5)
P 		387
(-2.6)
P 		852.3
(3)
P 		499
avr 678.1
(3) 		556.9
(0.4) 		393
(-3) 		441.9
(-2) 		559.6
(0.5) 		652.2
(2.5) 		285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 185.3
(3)
P 		84
(-2.2)
P 		68.2
(-3)
P 		109.4
(-0.9)
P 		117
B 178.5
(2.5)
P 		77.1
(-3)
P 		93.4
(-2.1)
P 		187.1
(3)
P 		110
C 150.3
(1.2)
P 		102
(-3)
P 		130.5
(-0.6)
P 		171.8
(3)
P 		70
avr 171.4
(3) 		87.7
(-3) 		97.4
(-2.3) 		156.1
(1.9) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 110.9
(-0.8)
P 		178.3
(2.7)
P 		68
(-3)
P 		102
(-1.3)
P 		185
(3)
P 		110.1
(-0.8)
P 		117
B 285.7
(3)
P 		184.2
(-0.6)
P 		124.5
(-2.8)
P 		118.5
(-3)
P 		275.8
(2.6)
P 		243.2
(1.5)
P 		167
C 226.7
(1.2)
P 		187.9
(0)
P 		90
(-3)
P 		95.8
(-2.8)
P 		125.2
(-1.9)
P 		285.3
(3)
P 		195
avr 207.8
(2.7) 		183.5
(1.5) 		94.2
(-3) 		105.4
(-2.4) 		195.3
(2.1) 		212.9
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25964
Sequence Type Exemplar sequence
Representative Public ID C35781 NCBI
Target Description C35781_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F15A8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C35781 /WB_GENE_ID=F15A8.6 /WP=CE09404 /CHR=X /FEA=Genomic Cluster /DEF=esterase; C.elegans cDNA clone yk448e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076360 NCBI Caenorhabditis elegans F15A8.6 (esterase) mRNA, complete cds. 11/11 None
F15A8.6 ENSEMBL cdna:known chromosome:CEL140:X:4430902:4434475:-1 gene:F15A8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4430913-4434477(-) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl F15A8.6
Entrez Gene 180715 Entrez gene
SwissProt O02147 EMBL-EBI
WormBase CE31907 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637833_AT Juvenile hormone esterase dm
Protein Similarities
Method ID Description E-Value
blast NP_508761 F15A8.6 [Caenorhabditis elegans] gb|AAB52848.3| Hypothetical protein F15A8.6 [Caenorhabditis elegans] 0.0
blast CAE68594 Hypothetical protein CBG14465 [Caenorhabditis briggsae] 0.0
blast AAB97558 Hypothetical protein F56C11.6a [Caenorhabditis elegans] ref|NP_490688.1| F56C11.6a [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173658_AT
tcaaagaacgtctaacccgagttatgaagaatcacaatattaagatatttatattttaac
tagactataataattttatttgtgattcatagtcacgttaatctcccagatctaatgttt
tttcttttctttcgaaaatcgggtcattcacgtagttttagagacatctcccacttattt
tattttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAGAACGTCTAACCCGAGTTAT 461 603 1751 Antisense
CTAACCCGAGTTATGAAGAATCACA 526 147 1762 Antisense
ATAATTTTATTTGTGATTCATAGTC 344 25 1820 Antisense
TTCATAGTCACGTTAATCTCCCAGA 512 683 1836 Antisense
GTCACGTTAATCTCCCAGATCTAAT 93 465 1842 Antisense
AATCTCCCAGATCTAATGTTTTTTC 281 147 1850 Antisense
TCTTTCGAAAATCGGGTCATTCACG 333 607 1878 Antisense
ATCGGGTCATTCACGTAGTTTTAGA 389 33 1888 Antisense
GTAGTTTTAGAGACATCTCCCACTT 235 455 1902 Antisense
AGACATCTCCCACTTATTTTATTTT 188 69 1912 Antisense
CATCTCCCACTTATTTTATTTTGTT 321 213 1915 Antisense
Sequence Source Affymetrix Proprietary Database