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[173656_at]

Description C41154 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18A11.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C41154 /WB_GENE_ID=C18A11.7 /WP=CE27706 /CHR=X /FEA=Genomic Cluster /GEN=dim-1 /DEF=C.elegans cDNA clone yk257f6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 22      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 15      6grp_total > 32      4grp_total > 58      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10499
1 2 3 4 range
A 4546
(-0.7)
P 		10891.6
(3)
P 		9807.3
(2.4)
P 		467.4
(-3)
P 		10424
B 5183.9
(0)
P 		9853.9
(3)
P 		9287.4
(2.6)
P 		393
(-3)
P 		9461
C 4912.3
(-0.1)
P 		9402.4
(3)
P 		8720.2
(2.5)
P 		601.1
(-3)
P 		8801
avr 4880.7
(-0.2) 		10049.3
(3) 		9271.6
(2.5) 		487.2
(-3) 		9562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4958
1 2 3 4 5 6 range
A 6578.6
(2.4)
P 		7002.6
(3)
P 		6422.1
(2.2)
P 		5211.2
(0.6)
P 		5079.3
(0.4)
P 		2545.6
(-3)
P 		4457
B 5788.1
(1.3)
P 		6545.3
(2.3)
P 		7106.6
(3)
P 		5939.6
(1.5)
P 		4345.5
(-0.5)
P 		2347.7
(-3)
P 		4759
C 5689.1
(1.2)
P 		6608.6
(2.3)
P 		7186.4
(3)
P 		5803.4
(1.3)
P 		4916.5
(0.3)
P 		2228.3
(-3)
P 		4958
avr 6018.6
(1.8) 		6718.8
(2.8) 		6905
(3) 		5651.4
(1.3) 		4780.4
(0.2) 		2373.9
(-3) 		4531
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2971
1 2 3 4 range
A 1655.2
(0.8)
P 		2364.3
(2.5)
P 		2563.8
(3)
P 		68.4
(-3)
P 		2495
B 1653.1
(1)
P 		2433.7
(3)
P 		2152.1
(2.3)
P 		83.7
(-3)
P 		2350
C 1626.1
(0.1)
P 		2703.2
(2.3)
P 		3039.3
(3)
P 		101.3
(-3)
P 		2938
avr 1644.8
(0.7) 		2500.4
(2.8) 		2585.1
(3) 		84.5
(-3) 		2501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1871
1 2 3 4 5 6 range
A 1212.7
(-1.1)
P 		2490.5
(3)
P 		1398.6
(-0.5)
P 		1321.7
(-0.7)
P 		1532.7
(-0.1)
P 		619.8
(-3)
P 		1871
B 2014
(2.2)
P 		2178.7
(3)
P 		1725.7
(0.9)
P 		1573.2
(0.2)
P 		1765.5
(1.1)
P 		875.5
(-3)
P 		1303
C 2108.7
(3)
P 		2016.5
(2.6)
P 		1829.1
(1.8)
P 		1167.1
(-1.1)
P 		1590.9
(0.7)
P 		745.9
(-3)
P 		1363
avr 1778.5
(1.2) 		2228.6
(3) 		1651.1
(0.7) 		1354
(-0.5) 		1629.7
(0.6) 		747.1
(-3) 		1482
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26003
Sequence Type Exemplar sequence
Representative Public ID C41154 NCBI
Target Description C41154 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18A11.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C41154 /WB_GENE_ID=C18A11.7 /WP=CE27706 /CHR=X /FEA=Genomic Cluster /GEN=dim-1 /DEF=C.elegans cDNA clone yk257f6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029250 NCBI Caenorhabditis elegans DIsorganized Muscle family member (dim-1) (dim-1) mRNA, complete cds. 11/11 None
C18A11.7b.2 ENSEMBL cdna:known chromosome:CEL140:X:8050417:8058172:-1 gene:C18A11.7 11/11 A 
C18A11.7b.1 ENSEMBL cdna:known chromosome:CEL140:X:8050417:8052620:-1 gene:C18A11.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C18A11.7b.4 6/11 Cross Hyb Matching Probes A 
C18A11.7b.3 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181062 2 1 NM_001029250 173656_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8050487-8058151(-) 100.0 100.0
Public Domain and Genome References
Ensembl C18A11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP31442 Disorganized muscle protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024421.1| DIsorganized Muscle family member (dim-1) [Caenorhabditis elegans] gb|AAM21705.1| DIM-1 short protein isoform [Caenorhabditis elegans] 0.0
blast AAC69011 Disorganized muscle protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024420.1| DIsorganized Muscle family member (dim-1) [Caenorhabditis elegans] gb|AAM23316.1| DIM-1(L) [Caenorhabditis elegans] sp|Q18066|DIM1_CAEEL Disorganized muscle protein 1 (2D-page protein spot 8) 0.0
blast CAE70343 Hypothetical protein CBG16888 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.4E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0013
Sequence
Target Sequence 
>C. ELEGANS:173656_AT
tacatgacatcatttgccttttgaatatctttcccattgccataccattgtgtaaccata
ccctctttttatattcatttttgaatttatttccatccaaaacaaaacaccgattctttt
ccgttcgtattttctttcccctcccatcgcccgcacgtcatccgatccctttcacaatta
tatgttttctctttgaaaatttttattgtcatggttctttcaagaatataaaaatctgca
cacctacttatttcccaagaatcggtgctgcaaaatgccacggactgataattatgatct
gcttccgaatgcaactcattataaaacattttaaagaatgctgaaagcctacagaatatt
aatcaaataaaatttttgtttgaggaacacctgttactagaccctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACATGACATCATTTGCCTTTTGAA 637 643 2030 Antisense
CTTTTGAATATCTTTCCCATTGCCA 242 221 2047 Antisense
TTTCCCATTGCCATACCATTGTGTA 202 671 2059 Antisense
TACCATTGTGTAACCATACCCTCTT 583 649 2072 Antisense
ACCATACCCTCTTTTTATATTCATT 214 87 2084 Antisense
ATCCGATCCCTTTCACAATTATATG 619 37 2189 Antisense
AAAATCTGCACACCTACTTATTTCC 92 131 2260 Antisense
ATTTCCCAAGAATCGGTGCTGCAAA 659 15 2279 Antisense
GGTGCTGCAAAATGCCACGGACTGA 271 499 2293 Antisense
ATAATTATGATCTGCTTCCGAATGC 502 25 2317 Antisense
GAGGAACACCTGTTACTAGACCCTC 549 403 2411 Antisense
Sequence Source Affymetrix Proprietary Database