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[173652_at]

Description C70682 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y50E8A.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70682 /WB_GENE_ID=Y50E8A.4 /WP=CE24405 /CHR=5 /FEA=Genomic Cluster /GEN=unc-61 /DEF=C.elegans cDNA clone yk411f2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 56      6grp_highest_sub > Da      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 359.8
(2.7)
P 		299.4
(0.6)
P 		369.2
(3)
P 		191.9
(-3)
P 		177
B 304.7
(-2.3)
P 		448.6
(0.2)
P 		604.8
(3)
P 		266.5
(-3)
P 		338
C 327.5
(-0.9)
P 		480
(1.8)
P 		552.4
(3)
P 		202.2
(-3)
P 		350
avr 330.7
(-0.7) 		409.3
(0.9) 		508.8
(3) 		220.2
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 655
1 2 3 4 5 6 range
A 400.2
(-2.6)
P 		366.6
(-3)
P 		422.7
(-2.3)
P 		390.9
(-2.7)
P 		698.1
(1.3)
P 		830.6
(3)
P 		464
B 393.4
(-3)
P 		471.3
(-2.3)
P 		632.7
(-0.7)
P 		506
(-1.9)
P 		513.2
(-1.9)
P 		1021.4
(3)
P 		628
C 447.5
(-1.9)
P 		375.4
(-3)
P 		468.2
(-1.6)
P 		554
(-0.3)
P 		518
(-0.9)
P 		774.6
(3)
P 		399
avr 413.7
(-2.9) 		404.4
(-3) 		507.9
(-1.7) 		483.6
(-2) 		576.4
(-0.8) 		875.5
(3) 		471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 131
(3)
P 		65
(-0.8)
P 		96.5
(1)
P 		28.1
(-3)
P 		103
B 97.2
(-0.1)
P 		110.8
(0.9)
P 		140.2
(3)
P 		56.8
(-3)
P 		83
C 108.4
(-0.2)
P 		138
(0.9)
P 		192.5
(3)
P 		34.1
(-3)
P 		158
avr 112.2
(1.2) 		104.6
(0.8) 		143.1
(3) 		39.7
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 73.8
(-3)
P 		130.4
(-0.5)
P 		92.1
(-2.2)
P 		99.1
(-1.9)
P 		210.6
(3)
P 		202.2
(2.6)
P 		137
B 136.9
(-2.9)
P 		156.9
(-2.4)
P 		153.6
(-2.5)
P 		134
(-3)
P 		208.5
(-1.2)
P 		380.9
(3)
P 		247
C 165.9
(-0.8)
P 		114.5
(-2.9)
P 		119.2
(-2.7)
P 		111.4
(-3)
P 		167.6
(-0.7)
P 		259.3
(3)
P 		148
avr 125.5
(-2.6) 		133.9
(-2.3) 		121.6
(-2.8) 		114.8
(-3) 		195.6
(-0.1) 		280.8
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25450
Sequence Type Exemplar sequence
Representative Public ID C70682 NCBI
Target Description C70682 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y50E8A.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70682 /WB_GENE_ID=Y50E8A.4 /WP=CE24405 /CHR=5 /FEA=Genomic Cluster /GEN=unc-61 /DEF=C.elegans cDNA clone yk411f2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074237 NCBI Caenorhabditis elegans UNCoordinated family member (unc-61) (unc-61) mRNA, complete cds. 11/11 None
Y50E8A.4b ENSEMBL cdna:known chromosome:CEL140:V:14733746:14736466:-1 gene:Y50E8A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179976 2 1 NM_074237 173652_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14733756-14736434(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y50E8A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54172 Hypothetical protein Y50E8A.4a [Caenorhabditis elegans] ref|NP_872156.1| UNCoordinated family member (unc-61) [Caenorhabditis elegans] 0.0
blast CAB60583 Hypothetical protein Y50E8A.4b [Caenorhabditis elegans] ref|NP_506638.1| UNCoordinated family member (unc-61) [Caenorhabditis elegans] 0.0
blast CAE60841 Hypothetical protein CBG04550 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000038 EMBL-EBI Cell division/GTP binding protein 7.9E-120
Sequence
Target Sequence 
>C. ELEGANS:173652_AT
gaatctgttattcgaactgtattatgattttgatattaatcccattttgttttatttccg
ttttttatgtatttcaaatacacactacacccaatttttatctctatccccatcccatcg
ttattgatttgatcttcacaaactccattattttatcgcatattattttcttttctaaaa
tatatatttcttgctagaaatatacagatctattatacccgcataatttactggtattat
cacttgttatcgttgtttgtatcctattcgtctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTGTTATTCGAACTGTATTAT 393 329 1398 Antisense
GATATTAATCCCATTTTGTTTTATT 446 427 1429 Antisense
TACACACTACACCCAATTTTTATCT 30 643 1476 Antisense
CTACACCCAATTTTTATCTCTATCC 395 227 1482 Antisense
TCCCCATCCCATCGTTATTGATTTG 194 595 1504 Antisense
ATCGTTATTGATTTGATCTTCACAA 574 35 1514 Antisense
TATACAGATCTATTATACCCGCATA 266 661 1598 Antisense
ATTATACCCGCATAATTTACTGGTA 322 13 1609 Antisense
TTTACTGGTATTATCACTTGTTATC 364 673 1624 Antisense
CACTTGTTATCGTTGTTTGTATCCT 138 197 1638 Antisense
CGTTGTTTGTATCCTATTCGTCTCT 386 247 1648 Antisense
Sequence Source Affymetrix Proprietary Database