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[173651_at] Ank repeat

Description CEK097H2F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T12D8.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D75223 /WB_GENE_ID=T12D8.3 /WP=CE16400 /CHR=3 /FEA=Genomic Cluster /DEF=Ank repeat; C.elegans cDNA clone yk97h2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 87      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 93      6grp_total > 96      4grp_total > 55      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 339.5
(1.5)
P 		324.2
(0.7)
P 		366.9
(3)
P 		257.1
(-3)
P 		110
B 416.5
(3)
P 		284.1
(-1.5)
P 		240.2
(-3)
P 		269.1
(-2)
P 		176
C 323
(3)
P 		284.3
(-1.7)
P 		274.1
(-3)
P 		300.2
(0.2)
P 		49
avr 359.7
(3) 		297.5
(-1.4) 		293.7
(-1.7) 		275.5
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 481
1 2 3 4 5 6 range
A 360.2
(-1)
P 		261.5
(-2.6)
P 		237.4
(-3)
P 		417.2
(-0)
P 		448.4
(0.5)
P 		599.3
(3)
P 		362
B 376.6
(-0.3)
P 		243.8
(-2.3)
P 		200.4
(-3)
P 		414.1
(0.3)
P 		442.8
(0.7)
P 		589.1
(3)
P 		389
C 279.2
(-2.6)
P 		250.9
(-3)
P 		342.7
(-1.7)
P 		315.2
(-2.1)
P 		398.2
(-0.9)
P 		681.8
(3)
P 		431
avr 338.7
(-1.6) 		252.1
(-3) 		260.2
(-2.9) 		382.2
(-0.9) 		429.8
(-0.1) 		623.4
(3) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 123.6
(3)
P 		70.4
(-0.7)
P 		95.9
(1.1)
P 		37.6
(-3)
P 		86
B 132.8
(3)
P 		70.2
(-1.9)
P 		55.7
(-3)
P 		57.3
(-2.9)
P 		77
C 106.9
(3)
P 		81.7
(0.3)
P 		95.5
(1.8)
P 		50.6
(-3)
P 		56
avr 121.1
(3) 		74.1
(-0.9) 		82.4
(-0.2) 		48.5
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 66.4
(-2.1)
P 		93
(-0.4)
P 		51.7
(-3)
P 		105.8
(0.4)
P 		135.3
(2.3)
P 		145.9
(3)
P 		94
B 131
(-0.1)
P 		81.2
(-1.9)
P 		48.7
(-3)
P 		109.7
(-0.9)
P 		179.9
(1.6)
P 		219.7
(3)
P 		171
C 103.5
(-1.5)
P 		76.6
(-2.5)
P 		87.2
(-2.1)
P 		63.4
(-3)
P 		128.9
(-0.6)
P 		228.2
(3)
P 		165
avr 100.3
(-1.3) 		83.6
(-2.1) 		62.5
(-3) 		93
(-1.6) 		148
(0.8) 		197.9
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23957
Sequence Type Exemplar sequence
Representative Public ID CEK097H2F NCBI
Target Description CEK097H2F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T12D8.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D75223 /WB_GENE_ID=T12D8.3 /WP=CE16400 /CHR=3 /FEA=Genomic Cluster /DEF=Ank repeat; C.elegans cDNA clone yk97h2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067416(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067416 NCBI Caenorhabditis elegans T12D8.3 (T12D8.3) mRNA, complete cds. 11/11 None
T12D8.3 ENSEMBL cdna:known chromosome:CEL140:III:13639472:13641204:-1 gene:T12D8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13639506-13641840(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ensembl T12D8.3
Entrez Gene 176800 Entrez gene
SwissProt Q9XVJ0 EMBL-EBI
WormBase CE37145 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248269_AT acyl-CoA binding protein, putative / ACBP, putative at
CANINE:1586253_AT similar to acyl-Coenzyme A binding domain containing 6 cfa
CANINE_2:CFA.5146.1.A1_S_AT similar to acyl-Coenzyme A binding domain containing 6 cfa
CHICKEN:GGAAFFX.2445.1.S1_AT similar to acyl-Coenzyme A binding domain containing 6 gga
CHICKEN:GGAAFFX.2449.1.S1_AT similar to acyl-Coenzyme A binding domain containing 6 gga
HU35KSUBA:T94828_AT acyl-Coenzyme A binding domain containing 6 hs
HU35KSUBB:RC_AA085012_AT acyl-Coenzyme A binding domain containing 6 hs
U133_X3P:HS.63220.0.A1_3P_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U133_PLUS_2:225317_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U133B:225317_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U95B:53977_AT acyl-Coenzyme A binding domain containing 6 hs
HG-U95C:66306_AT Acyl-Coenzyme A binding domain containing 6 hs
HG-U95D:73917_AT Acyl-Coenzyme A binding domain containing 6 hs
HG-U95D:84457_AT Acyl-Coenzyme A binding domain containing 6 hs
MG-U74AV2:104346_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430_2:1452601_A_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430A_2:1452601_A_AT acyl-Coenzyme A binding domain containing 6 mm
MOE430A:1452601_A_AT acyl-Coenzyme A binding domain containing 6 mm
MOE430A:1453199_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430A_2:1453199_AT acyl-Coenzyme A binding domain containing 6 mm
MOUSE430_2:1453199_AT acyl-Coenzyme A binding domain containing 6 mm
MU19KSUBA:TC18514_AT Acyl-Coenzyme A binding domain containing 6 (Acbd6), mRNA mm
MU19KSUBA:TC18514_G_AT Acyl-Coenzyme A binding domain containing 6 (Acbd6), mRNA mm
MU11KSUBB:W30185_S_AT Acyl-Coenzyme A binding domain containing 6 (Acbd6), mRNA mm
RAE230A:1374555_AT acyl-Coenzyme A binding domain containing 6 (predicted) rn
RAT230_2:1374555_AT acyl-Coenzyme A binding domain containing 6 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
62 acyl-CoA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03343 Hypothetical protein T12D8.3 [Caenorhabditis elegans] ref|NP_499817.2| T12D8.3 [Caenorhabditis elegans] 1.0E-158
blast CAE71345 Hypothetical protein CBG18247 [Caenorhabditis briggsae] 7.0E-91
blast XP_422259 PREDICTED: similar to acyl-Coenzyme A binding domain containing 6 [Gallus gallus] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 2.4E-10
Pfam IPR002110 EMBL-EBI Ankyrin 0.0013
Pfam IPR002110 EMBL-EBI Ankyrin 1.7E-6
Sequence
Target Sequence 
>C. ELEGANS:173651_AT
attgacgccatagggcggatttccttagaccaccctgaatttgtaaatatcaaatttcaa
cataattttttttttgattttgtgtgtgtgccctttgctacttttcattcatccatttct
ccccgtttctgtgagatattcctcgttcctagcgtcttgagtttcaaatttcaagaaatc
cttccaactttctgcttctatacttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGACGCCATAGGGCGGATTTCCT 613 1 1132 Antisense
CATAGGGCGGATTTCCTTAGACCAC 1 203 1140 Antisense
TTCCTTAGACCACCCTGAATTTGTA 653 695 1152 Antisense
AGACCACCCTGAATTTGTAAATATC 309 69 1158 Antisense
TTTTGATTTTGTGTGTGTGCCCTTT 15 679 1203 Antisense
TTGCTACTTTTCATTCATCCATTTC 301 703 1226 Antisense
CATTTCTCCCCGTTTCTGTGAGATA 311 215 1245 Antisense
CTGTGAGATATTCCTCGTTCCTAGC 427 239 1260 Antisense
CGTTCCTAGCGTCTTGAGTTTCAAA 170 245 1275 Antisense
AAGAAATCCTTCCAACTTTCTGCTT 318 153 1304 Antisense
TCCAACTTTCTGCTTCTATACTTAT 554 587 1314 Antisense
Sequence Source Affymetrix Proprietary Database