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[173645_s_at]

Description C69539 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y119D3B.I /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69539 /WB_GENE_ID=Y119D3B.I /WP=CE23377 /CHR=3 /FEA=Genomic Cluster /DEF=(ST.LOUIS); C.elegans cDNA clone yk368b4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 85      6grp_total > 57      4grp_total > 32      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 435
1 2 3 4 range
A 732.9
(-3)
P 		967.4
(0.3)
P 		1026.9
(1.2)
P 		1153.2
(3)
P 		420
B 718.1
(-3)
P 		833.4
(-0.3)
P 		971.8
(3)
P 		864.4
(0.5)
P 		254
C 765.1
(-3)
P 		976.5
(3)
P 		969.3
(2.8)
P 		841.7
(-0.8)
P 		211
avr 738.7
(-3) 		925.8
(1.5) 		989.3
(3) 		953.1
(2.1) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 733
1 2 3 4 5 6 range
A 466.8
(-2.5)
P 		853.2
(2.9)
P 		703.7
(0.8)
P 		842.6
(2.7)
P 		434.3
(-3)
P 		861.2
(3)
P 		427
B 683.9
(-0.1)
P 		654.5
(-0.7)
P 		534.6
(-3)
P 		760.3
(1.4)
P 		682.4
(-0.1)
P 		844.7
(3)
P 		310
C 1167.3
(3)
P 		631.9
(-3)
P 		926
(0.3)
P 		627.5
(-3)
P 		844.9
(-0.6)
P 		789.7
(-1.2)
P 		540
avr 772.7
(1) 		713.2
(-1) 		721.4
(-0.7) 		743.5
(0) 		653.9
(-3) 		831.9
(3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 266.8
(2.9)
P 		210
(-0.5)
P 		268.5
(3)
P 		168.8
(-3)
P 		100
B 229
(3)
P 		205.8
(-0.1)
P 		225.2
(2.5)
P 		184.2
(-3)
P 		45
C 253.3
(0.4)
P 		280.7
(1.3)
P 		337.8
(3)
P 		141.9
(-3)
P 		196
avr 249.7
(1.5) 		232.2
(0.6) 		277.2
(3) 		165
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 86.1
(-3)
P 		303.4
(3)
P 		153.3
(-1.1)
P 		213.7
(0.5)
P 		131
(-1.8)
P 		209.7
(0.4)
P 		217
B 238
(0.5)
P 		217.8
(-0.1)
P 		129.8
(-3)
P 		201.4
(-0.7)
P 		277.2
(1.8)
P 		315
(3)
P 		185
C 432.7
(3)
P 		192.8
(-1.7)
P 		235.7
(-0.9)
P 		126.2
(-3)
P 		273.4
(-0.1)
P 		264.4
(-0.3)
P 		307
avr 252.3
(2.3) 		238
(1.3) 		172.9
(-3) 		180.4
(-2.5) 		227.2
(0.6) 		263
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173645_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24422
Sequence Type Exemplar sequence
Representative Public ID C69539 NCBI
Target Description C69539 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y119D3B.I /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69539 /WB_GENE_ID=Y119D3B.I /WP=CE23377 /CHR=3 /FEA=Genomic Cluster /DEF=(ST.LOUIS); C.elegans cDNA clone yk368b4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064945(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064945 NCBI Caenorhabditis elegans Y119D3B.15 (Y119D3B.15) mRNA, complete cds. 9/11 None
Y119D3B.15.2 ENSEMBL cdna:known chromosome:CEL140:III:1194402:1196284:-1 gene:Y119D3B.15 9/11 None
Y119D3B.15.1 ENSEMBL cdna:known chromosome:CEL140:III:1194424:1196282:-1 gene:Y119D3B.15 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002015 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002037 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1194434-1196470(-) 95.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119D3B.15
Entrez Gene 175284 Entrez gene
SwissProt Q95Y72 EMBL-EBI
WormBase CE34396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29724 Hypothetical protein Y119D3B.15 [Caenorhabditis elegans] ref|NP_497346.2| Y119D3B.15 [Caenorhabditis elegans] sp|Q95Y72|SEM1_CAEEL Putative 26 proteasome complex subunit sem1 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR007834 EMBL-EBI DSS1/SEM1 6.0E-11
Sequence
Target Sequence 
>C. ELEGANS:173645_S_AT
ttaagcctattttcagcctatttccagtcgaaatgtcatctaccgccgccaaaaaagacg
tgaaaagctcggctgttccagtcactgctgtcgttgagaagaaggaattcgaggaggaag
aatttgaggaatttccggttcaggaatgggctgagcgtgccgaaggagaagaggatgatg
tgaacgtttgggaggataattgggatgatgagactcatgaaagcgaattttcgaagcaat
tgaaggaggaactccgcaaatctggacaccaagtcgccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAGCCTATTTTCAGCCTATTTCC 292 685 114 Antisense
CTATTTTCAGCCTATTTCCAGTCGA 68 223 120 Antisense
CCAGTCGAAATGTCATCTACCGCCG 193 271 137 Antisense
ATCTACCGCCGCCAAAAAAGACGTG 306 31 151 Antisense
TGAAAAGCTCGGCTGTTCCAGTCAC 529 573 174 Antisense
TCCAGTCACTGCTGTCGTTGAGAAG 242 591 190 Antisense
GGAATTTCCGGTTCAGGAATGGGCT 161 531 241 Antisense
GGAATGGGCTGAGCGTGCCGAAGGA 31 533 256 Antisense
GAGGATGATGTGAACGTTTGGGAGG 619 403 284 Antisense
GAGGAACTCCGCAAATCTGGACACC 555 403 359 Antisense
GCAAATCTGGACACCAAGTCGCCTA 674 315 369 Antisense
Sequence Source Affymetrix Proprietary Database