[Home] | [Total List]

[173640_at]

Description AV197102 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC513.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197102 /WB_GENE_ID=ZC513.7 /WP=CE28167 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662c1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 05      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 04      6grp_total > 05      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3855
1 2 3 4 range
A 3662.9
(2.6)
P 		3879.3
(3)
P 		3118.8
(1.7)
P 		478
(-3)
P 		3401
B 3517.4
(1.9)
P 		4232.2
(3)
P 		3312.5
(1.5)
P 		490.3
(-3)
P 		3742
C 3833.9
(2.4)
P 		4235.9
(3)
P 		3786.5
(2.3)
P 		381.4
(-3)
P 		3855
avr 3671.4
(2.3) 		4115.8
(3) 		3405.9
(1.8) 		449.9
(-3) 		3666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3459
1 2 3 4 5 6 range
A 4871.7
(3)
P 		3850.7
(0.6)
P 		4385.9
(1.8)
P 		3314.6
(-0.7)
P 		4029.7
(1)
P 		2365
(-3)
P 		2507
B 5823.5
(3)
P 		4536.1
(0.1)
P 		4242.8
(-0.5)
P 		3542.4
(-2.1)
P 		4259.6
(-0.5)
P 		3127.5
(-3)
P 		2696
C 5792.1
(3)
P 		3909.4
(-1.4)
P 		3458.9
(-2.5)
P 		3546.5
(-2.3)
P 		4423.3
(-0.2)
P 		3233.7
(-3)
P 		2558
avr 5495.8
(3) 		4098.7
(-0.2) 		4029.2
(-0.4) 		3467.8
(-1.7) 		4237.5
(0.1) 		2908.7
(-3) 		2587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1269
1 2 3 4 range
A 1333.7
(3)
P 		842.1
(0.7)
P 		815.3
(0.5)
P 		70
(-3)
P 		1264
B 1121.7
(3)
P 		1045.3
(2.5)
P 		767.6
(0.9)
P 		104.5
(-3)
P 		1017
C 1269.1
(2.8)
P 		1217.8
(2.5)
P 		1319.7
(3)
P 		64.3
(-3)
P 		1255
avr 1241.5
(3) 		1035.1
(1.9) 		967.5
(1.6) 		79.6
(-3) 		1162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1571
1 2 3 4 5 6 range
A 898.1
(-0.6)
P 		1369.5
(3)
P 		955.2
(-0.1)
P 		840.7
(-1)
P 		1216
(1.8)
P 		575.8
(-3)
P 		794
B 2026.3
(3)
P 		1509.9
(0.2)
P 		1030.3
(-2.5)
P 		938.3
(-3)
P 		1730.6
(1.4)
P 		1166.2
(-1.7)
P 		1088
C 2146.9
(3)
P 		1192.9
(-1)
P 		880.3
(-2.3)
P 		713.2
(-3)
P 		1431.3
(0)
P 		1082.5
(-1.5)
P 		1434
avr 1690.4
(3) 		1357.4
(0.7) 		955.3
(-2.1) 		830.7
(-3) 		1459.3
(1.4) 		941.5
(-2.2) 		860
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25168
Sequence Type Exemplar sequence
Representative Public ID AV197102 NCBI
Target Description AV197102 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC513.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197102 /WB_GENE_ID=ZC513.7 /WP=CE28167 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662c1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV197102
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV197102 AV197102 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC513.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV197102 /WB_GENE_ID=ZC513.7 /WP=CE28167 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662c1 : 5prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8042082-8043246(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:173640_AT
caagagaacctatatacatcatcatatccattcaagagagagtttatcctattgcccccc
attcccccaccacccgcatatcattcattaatcaacagcttcttttattcatttgattac
ttgctaacttcattgagaacatatacattcactgtgatacttgaaatactaacaatattg
gttccgcattttgagaaaaaaaaagttctagaaaaagcccaccgaaaaatatatacagtt
tgaaagtccccccacccccacctcaaaagcccatttattcaccaattgtgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAGAACCTATATACATCATCAT 387 183 487 Antisense
TACATCATCATATCCATTCAAGAGA 521 643 501 Antisense
AAGAGAGAGTTTATCCTATTGCCCC 624 153 520 Antisense
CCACCCGCATATCATTCATTAATCA 104 275 556 Antisense
ATCATTCATTAATCAACAGCTTCTT 280 31 566 Antisense
AACAGCTTCTTTTATTCATTTGATT 85 137 580 Antisense
GATTACTTGCTAACTTCATTGAGAA 471 429 601 Antisense
GAACATATACATTCACTGTGATACT 542 351 623 Antisense
AACAATATTGGTTCCGCATTTTGAG 560 133 657 Antisense
CCACCTCAAAAGCCCATTTATTCAC 86 275 744 Antisense
GCCCATTTATTCACCAATTGTGCCT 269 285 755 Antisense
Sequence Source Affymetrix Proprietary Database