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[173639_at]

Description AV192250 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C34E7.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV192250 /WB_GENE_ID=C34E7.4 /WP=CE03061 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk603b2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 90      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 65      6grp_total > 92      4grp_total > 56      6grp_highest_sub > 05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2111
1 2 3 4 range
A 814.1
(-1.9)
P 		1147.6
(-1)
P 		2550.4
(3)
P 		439.8
(-3)
P 		2111
B 831.6
(-2.1)
P 		1748.4
(0.8)
P 		2480.2
(3)
P 		521.7
(-3)
P 		1959
C 668.1
(-2.4)
P 		2016.1
(2)
P 		2325.8
(3)
P 		469
(-3)
P 		1857
avr 771.3
(-2.1) 		1637.4
(0.5) 		2452.1
(3) 		476.8
(-3) 		1975

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 989
1 2 3 4 5 6 range
A 1056.9
(-0.5)
P 		916.3
(-1.5)
P 		954.1
(-1.2)
P 		894.2
(-1.7)
P 		1524.9
(3)
P 		711.6
(-3)
P 		813
B 1124.8
(-0.5)
P 		1045.2
(-1)
P 		827.4
(-2.5)
P 		1338.8
(0.9)
P 		1649
(3)
P 		745.3
(-3)
P 		904
C 932.1
(-0.2)
P 		1236.1
(2.9)
P 		875.6
(-0.8)
P 		706.8
(-2.5)
P 		1243.3
(3)
P 		660.5
(-3)
P 		583
avr 1037.9
(-0.4) 		1065.9
(-0.2) 		885.7
(-1.6) 		979.9
(-0.9) 		1472.4
(3) 		705.8
(-3) 		767
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 746
1 2 3 4 range
A 296.4
(-0.7)
P 		249.1
(-1.2)
P 		666.7
(3)
P 		64.4
(-3)
P 		602
B 265.2
(-1)
P 		431.8
(1.2)
P 		574.7
(3)
P 		111.2
(-3)
P 		464
C 221.2
(-1.8)
P 		579.6
(1.1)
P 		810.6
(3)
P 		79.1
(-3)
P 		732
avr 260.9
(-1.2) 		420.2
(0.4) 		684
(3) 		84.9
(-3) 		599

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 194.8
(-2.5)
P 		325.9
(0.2)
P 		207.8
(-2.3)
P 		226.8
(-1.9)
P 		460.1
(3)
P 		173.2
(-3)
P 		287
B 391.4
(-0.6)
P 		347.9
(-1.1)
P 		200.9
(-3)
P 		354.6
(-1)
P 		670
(3)
P 		277.9
(-2)
P 		469
C 345.5
(1.7)
P 		377.2
(2.4)
P 		222.9
(-1.1)
P 		142.1
(-3)
P 		402.3
(3)
P 		221.1
(-1.2)
P 		260
avr 310.6
(-1) 		350.3
(-0.2) 		210.5
(-3) 		241.2
(-2.4) 		510.8
(3) 		224.1
(-2.7) 		300
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26098
Sequence Type Exemplar sequence
Representative Public ID AV192250 NCBI
Target Description AV192250 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C34E7.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV192250 /WB_GENE_ID=C34E7.4 /WP=CE03061 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk603b2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077748 NCBI Caenorhabditis elegans C34E7.4 (C34E7.4) mRNA, complete cds. 11/11 None
C34E7.4 ENSEMBL cdna:known chromosome:CEL140:X:12932187:12934896:-1 gene:C34E7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12932197-12934815(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E7.4
Entrez Gene 181426 Entrez gene
SwissProt Q17674 EMBL-EBI
WormBase CE03061 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91795 Hypothetical protein C34E7.4 [Caenorhabditis elegans] emb|CAA91790.1| Hypothetical protein C34E7.4 [Caenorhabditis elegans] ref|NP_510149.1| C34E7.4 [Caenorhabditis elegans] 1.0E-134
blast CAE70368 Hypothetical protein CBG16927 [Caenorhabditis briggsae] 1.0E-128
blast CAE70367 Hypothetical protein CBG16926 [Caenorhabditis briggsae] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:173639_AT
tcccagccaaactaatttcacgatttcatcagcttttttgtcattttttcttttttcttt
catttcaccaattccatcgattctggttgagtcggtgtgtgtctgtatttcagtggacga
ccgggtaaaaccaacaaaatttacagcattcattcttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCAGCCAAACTAATTTCACGATT 354 597 746 Antisense
AATTTCACGATTTCATCAGCTTTTT 486 175 759 Antisense
ACGATTTCATCAGCTTTTTTGTCAT 635 93 765 Antisense
TTTCATCAGCTTTTTTGTCATTTTT 265 673 769 Antisense
TTTCTTTCATTTCACCAATTCCATC 398 669 799 Antisense
TCCATCGATTCTGGTTGAGTCGGTG 492 591 818 Antisense
GATTCTGGTTGAGTCGGTGTGTGTC 402 429 824 Antisense
GAGTCGGTGTGTGTCTGTATTTCAG 624 399 834 Antisense
TGTGTCTGTATTTCAGTGGACGACC 422 555 843 Antisense
AAACCAACAAAATTTACAGCATTCA 210 125 873 Antisense
AAAATTTACAGCATTCATTCTTTTT 258 133 881 Antisense
Sequence Source Affymetrix Proprietary Database