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[173638_s_at]

Description AV193934 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK177.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193934 /WB_GENE_ID=ZK177.8 /WP=CE07618 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk623c7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 37      4grp_high_8_8 > 03      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 651
1 2 3 4 range
A 567.9
(1.3)
P 		337.3
(-3)
P 		385.4
(-2.1)
P 		659.6
(3)
P 		322
B 627.4
(0)
P 		322.7
(-3)
P 		468.1
(-1.5)
P 		923.8
(3)
P 		601
C 616.9
(0.7)
P 		272.9
(-3)
P 		414.3
(-1.5)
P 		828.1
(3)
P 		555
avr 604.1
(0.6) 		311
(-3) 		422.6
(-1.6) 		803.8
(3) 		493

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 890
1 2 3 4 5 6 range
A 336.8
(-3)
P 		428.6
(-2.4)
P 		446
(-2.2)
P 		452.4
(-2.2)
P 		688.9
(-0.5)
P 		1186.2
(3)
P 		849
B 370.4
(-3)
P 		378
(-2.9)
P 		422.5
(-2.5)
P 		427.3
(-2.5)
P 		657.6
(-0.4)
P 		1039.5
(3)
P 		669
C 385.3
(-3)
P 		419.4
(-2.8)
P 		559.5
(-1.8)
P 		498
(-2.2)
P 		670.9
(-1)
P 		1226.6
(3)
P 		841
avr 364.2
(-3) 		408.7
(-2.7) 		476
(-2.1) 		459.2
(-2.3) 		672.5
(-0.6) 		1150.8
(3) 		787
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 206.8
(3)
P 		73.2
(-3)
P 		100.8
(-1.8)
P 		96.5
(-2)
P 		134
B 200.1
(3)
P 		79.7
(-3)
P 		108.5
(-1.6)
P 		196.9
(2.8)
P 		120
C 204.2
(3)
P 		78.5
(-3)
P 		144.4
(0.1)
P 		139.6
(-0.1)
P 		126
avr 203.7
(3) 		77.1
(-3) 		117.9
(-1.1) 		144.3
(0.2) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 62.1
(-3)
P 		152.4
(-0.6)
P 		97.1
(-2.1)
P 		114.7
(-1.6)
P 		207.9
(0.9)
P 		288.8
(3)
P 		227
B 128.9
(-2.4)
P 		125.8
(-2.5)
P 		102.6
(-3)
P 		113.2
(-2.8)
P 		267.2
(0.5)
P 		387.6
(3)
P 		285
C 142.8
(-2.2)
P 		128
(-2.5)
P 		142.4
(-2.2)
P 		100.2
(-3)
P 		217.1
(-0.7)
P 		410.6
(3)
P 		310
avr 111.3
(-3) 		135.4
(-2.4) 		114
(-2.9) 		109.4
(-3) 		230.7
(-0.1) 		362.3
(3) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173638_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23689
Sequence Type Exemplar sequence
Representative Public ID AV193934 NCBI
Target Description AV193934 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK177.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=AV193934 /WB_GENE_ID=ZK177.8 /WP=CE07618 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk623c7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062653(11), NM_062654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062653 NCBI Caenorhabditis elegans ZK177.8a (ZK177.8) mRNA, complete cds. 11/11 None
NM_062654 NCBI Caenorhabditis elegans ZK177.8b (ZK177.8) mRNA, complete cds. 11/11 None
SNAP00000012885 ENSEMBL cdna:SNAP chromosome:CEL140:II:5509207:5511171:-1 11/11 None
GENEFINDER00000012895 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5509207:5511171:-1 11/11 None
ZK177.8a ENSEMBL cdna:known chromosome:CEL140:II:5509004:5513718:-1 gene:ZK177.8 11/11 None
ZK177.8b.2 ENSEMBL cdna:known chromosome:CEL140:II:5509207:5511180:-1 gene:ZK177.8 11/11 None
ZK177.8b.1 ENSEMBL cdna:known chromosome:CEL140:II:5509207:5511178:-1 gene:ZK177.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5509073-5513703(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK177.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00049 Hypothetical protein ZK177.8a [Caenorhabditis elegans] ref|NP_495054.1| ZK177.8a [Caenorhabditis elegans] sp|Q09374|YS48_CAEEL Hypothetical protein ZK177.8 in chromosome II 0.0
blast AAL11111 Hypothetical protein ZK177.8b [Caenorhabditis elegans] ref|NP_495055.1| ZK177.8b [Caenorhabditis elegans] 0.0
blast CAE59125 Hypothetical protein CBG02420 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006674 EMBL-EBI Metal-dependent phosphohydrolase, HD subdomain 1.3E-9
Pfam IPR006674 EMBL-EBI Metal-dependent phosphohydrolase, HD subdomain 1.3E-9
Sequence
Target Sequence 
>C. ELEGANS:173638_S_AT
ctgtaatgcattccgtccttggtagaggtttggacgataaaactcatccaatcgaacgtc
agattttctacgatggaaaaccgagtgagcatgaagggaaacaagttgtcggattctatc
catctgaagattaggttatcaacaattgccctcgcatggccacaaaatgggaaatcttcg
tgatgggagatcgtagtttgaggaaagagccactgttagcggatcgcgtgaagcgtgcac
ttcaacttgctggggagtctgaaaagtttttgaccccacgaaaaagatctccgcaagatt
ctcctgatgaagtttcatcgagctgctccactgccaaacgtcgtctcgaatttggtagct
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTAATGCATTCCGTCCTTGGTAG 136 239 1413 Antisense
AAAACTCATCCAATCGAACGTCAGA 316 131 1451 Antisense
CAAGTTGTCGGATTCTATCCATCTG 338 185 1514 Antisense
TATCAACAATTGCCCTCGCATGGCC 148 659 1549 Antisense
GAAAGAGCCACTGTTAGCGGATCGC 100 359 1615 Antisense
AGCGGATCGCGTGAAGCGTGCACTT 456 81 1630 Antisense
GCACTTCAACTTGCTGGGGAGTCTG 257 315 1649 Antisense
GACCCCACGAAAAAGATCTCCGCAA 313 381 1684 Antisense
ATCTCCGCAAGATTCTCCTGATGAA 457 33 1699 Antisense
GATGAAGTTTCATCGAGCTGCTCCA 307 413 1718 Antisense
ACGTCGTCTCGAATTTGGTAGCTCA 145 95 1750 Antisense
Sequence Source Affymetrix Proprietary Database