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[173637_s_at]

Description CEK006E7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C05D10.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27958 /WB_GENE_ID=C05D10.1 /WP=CE24783 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 50      6grp_total > 16      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 672
1 2 3 4 range
A 870.8
(3)
P 		415.9
(-3)
P 		433.3
(-2.8)
P 		422.5
(-2.9)
P 		455
B 896.2
(3)
P 		499.2
(-0.7)
P 		467.3
(-1)
P 		247.5
(-3)
P 		649
C 919
(3)
P 		427.6
(-1.4)
P 		417.6
(-1.5)
P 		250.4
(-3)
P 		669
avr 895.3
(3) 		447.6
(-1.6) 		439.4
(-1.6) 		306.8
(-3) 		589

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 801
1 2 3 4 5 6 range
A 730.5
(1.8)
P 		836.5
(3)
P 		295.3
(-3)
P 		358.4
(-2.3)
P 		369
(-2.2)
P 		502.8
(-0.7)
P 		541
B 569.8
(3)
P 		506.9
(1.7)
P 		348.3
(-1.5)
P 		348
(-1.5)
P 		363.8
(-1.2)
P 		276.4
(-3)
P 		293
C 1010.6
(3)
P 		525.1
(-0.6)
P 		471.2
(-1)
P 		390.3
(-1.6)
P 		369.1
(-1.8)
P 		209.7
(-3)
P 		801
avr 770.3
(3) 		622.8
(1) 		371.6
(-2.4) 		365.6
(-2.5) 		367.3
(-2.5) 		329.6
(-3) 		441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 317
(3)
P 		90.3
(-2.3)
P 		113.3
(-1.8)
P 		61.9
(-3)
P 		255
B 285.8
(3)
P 		123.3
(-1.2)
P 		108.3
(-1.6)
P 		52.7
(-3)
P 		233
C 304.2
(3)
P 		122.9
(-1.2)
P 		145.5
(-0.6)
P 		42.2
(-3)
P 		262
avr 302.3
(3) 		112.2
(-1.6) 		122.4
(-1.3) 		52.3
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 134.7
(-1.2)
P 		297.5
(3)
P 		64.3
(-3)
P 		90.9
(-2.3)
P 		111.3
(-1.8)
P 		122.4
(-1.5)
P 		233
B 198.3
(3)
P 		168.7
(1.4)
P 		84.6
(-3)
P 		92.2
(-2.6)
P 		147.8
(0.3)
P 		103.1
(-2)
P 		114
C 374.6
(3)
P 		160.2
(-1.2)
P 		119.9
(-2)
P 		78.5
(-2.8)
P 		119.4
(-2)
P 		70.2
(-3)
P 		304
avr 235.9
(3) 		208.8
(1.9) 		89.6
(-2.9) 		87.2
(-3) 		126.2
(-1.4) 		98.6
(-2.5) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173637_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24118
Sequence Type Exemplar sequence
Representative Public ID CEK006E7R NCBI
Target Description CEK006E7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C05D10.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27958 /WB_GENE_ID=C05D10.1 /WP=CE24783 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171147(11), NM_171148(11), NM_001025973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171147 NCBI Caenorhabditis elegans C05D10.1a (C05D10.1) mRNA, complete cds. 11/11 None
NM_171148 NCBI Caenorhabditis elegans C05D10.1b (C05D10.1) mRNA, complete cds. 11/11 None
NM_001025973 NCBI Caenorhabditis elegans C05D10.1c (C05D10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000011503 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6080517:6084371:1 11/11 None
SNAP00000011485 ENSEMBL cdna:SNAP chromosome:CEL140:III:6082112:6084371:1 11/11 None
C05D10.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:6080503:6084678:1 gene:C05D10.1 11/11 None
C05D10.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:6080504:6084678:1 gene:C05D10.1 11/11 None
C05D10.1c.1 ENSEMBL cdna:known chromosome:CEL140:III:6082106:6084371:1 gene:C05D10.1 11/11 None
C05D10.1b ENSEMBL cdna:known chromosome:CEL140:III:6082112:6084371:1 gene:C05D10.1 11/11 None
C05D10.1c.2 ENSEMBL cdna:known chromosome:CEL140:III:6082729:6084371:1 gene:C05D10.1 11/11 None
C05D10.1c.3 ENSEMBL cdna:known chromosome:CEL140:III:6082732:6084371:1 gene:C05D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6080516-6084371(+) 100.0 100.0
Public Domain and Genome References
Ensembl C05D10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA20986 Hypothetical protein C05D10.1a [Caenorhabditis elegans] ref|NP_741168.1| C05D10.1a [Caenorhabditis elegans] sp|Q11178|YPC1_CAEEL Hypothetical protein C05D10.1 in chromosome III 0.0
blast A88474 protein C05D10.1 [imported] - Caenorhabditis elegans 0.0
blast AAV34802 Hypothetical protein C05D10.1c [Caenorhabditis elegans] ref|NP_001021144.1| C05D10.1c [Caenorhabditis elegans] 0.0
blast AAM15541 Hypothetical protein C05D10.1b [Caenorhabditis elegans] ref|NP_741169.1| C05D10.1b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173637_S_AT
gatctcgttgactacatggtttccctgaagaactcagatccacatggtggccacttcacc
gcatctcaggccctgcatatggctcgtcaatacatactcgaaagagctccaggccttctc
gaagagcatggaggtcatgtaaagctgaagctcacctgggcgatgaagttggtgtcgaga
attggggaacgacagcgggaaatcgagctaggacttccagccggaacactgtcgaatatg
ggacgaaacttgacaaatataccggctggtggcaattttatggctgatatgatggctcag
aacatcttttcgcagcatatgatgatggtgaatcaacaattggaaggtggatctccacca
gcatcttcttcatcaactgccacgacatcgacagccacgaagacagtgaagcaagagtcg
aaaaatggacatcagaatgaggaaaatttaaatgtgaaacaagaaggctccacgatgccc
gaaataataaatatcaaagagctcaatcttccattcctcaacaacttccttgccgaacta
aacgacaacaactcgggactgattgacggtgaaattggtgcagcaggtccatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCGTTGACTACATGGTTTCCC 35 417 978 Antisense
CAGATCCACATGGTGGCCACTTCAC 485 205 1012 Antisense
GCCCTGCATATGGCTCGTCAATACA 522 285 1047 Antisense
AGCTCCAGGCCTTCTCGAAGAGCAT 325 81 1082 Antisense
GTAAAGCTGAAGCTCACCTGGGCGA 72 461 1116 Antisense
GAAATCGAGCTAGGACTTCCAGCCG 33 363 1176 Antisense
CTTCCAGCCGGAACACTGTCGAATA 466 219 1191 Antisense
TGGCTCAGAACATCTTTTCGCAGCA 156 545 1270 Antisense
CCACGACATCGACAGCCACGAAGAC 175 273 1357 Antisense
CAAAGAGCTCAATCTTCCATTCCTC 315 193 1472 Antisense
GAAATTGGTGCAGCAGGTCCATCCA 187 361 1548 Antisense
Sequence Source Affymetrix Proprietary Database