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[173634_at] esterase

Description C69942 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M28.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69942 /WB_GENE_ID=M28.6 /WP=CE02284 /CHR=2 /FEA=Genomic Cluster /DEF=esterase; C.elegans cDNA clone yk370b6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 67      6grp_total > 70      4grp_total > 31      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1343
1 2 3 4 range
A 1992.6
(3)
P 		1244.8
(-3)
P 		1398.7
(-1.8)
P 		1419.8
(-1.6)
P 		748
B 2466
(3)
P 		1123.2
(-3)
P 		1135.5
(-2.9)
P 		1900.1
(0.5)
P 		1343
C 2029.5
(3)
P 		1179.1
(-3)
P 		1255
(-2.5)
P 		1443.6
(-1.1)
P 		850
avr 2162.7
(3) 		1182.4
(-3) 		1263.1
(-2.5) 		1587.8
(-0.5) 		980

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 1792.4
(0.7)
P 		1727.9
(-0.2)
P 		1504.2
(-3)
P 		1977.2
(3)
P 		1602.3
(-1.8)
P 		1536.5
(-2.6)
P 		473
B 1554.1
(0.9)
P 		1512
(0.3)
P 		1535.8
(0.6)
P 		1691.3
(3)
P 		1298.1
(-3)
P 		1491.5
(-0)
P 		393
C 1655.1
(-0.8)
P 		1530.1
(-3)
P 		1868.2
(3)
P 		1867.2
(3)
P 		1771.4
(1.3)
P 		1683.3
(-0.3)
P 		338
avr 1667.2
(-0.7) 		1590
(-2.3) 		1636.1
(-1.4) 		1845.2
(3) 		1557.3
(-3) 		1570.4
(-2.7) 		288
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 579
1 2 3 4 range
A 725.5
(3)
P 		270.2
(-2.3)
P 		365.6
(-1.2)
P 		207.8
(-3)
P 		518
B 786.4
(3)
P 		277.4
(-2.8)
P 		263.1
(-3)
P 		404.9
(-1.4)
P 		523
C 671.8
(3)
P 		339
(-1.7)
P 		437.4
(-0.3)
P 		243.4
(-3)
P 		428
avr 727.9
(3) 		295.5
(-2.9) 		355.4
(-2.1) 		285.4
(-3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 330.4
(-2.9)
P 		614.5
(3)
P 		327.6
(-3)
P 		501.5
(0.6)
P 		483.5
(0.3)
P 		374.1
(-2)
P 		287
B 540.8
(2.5)
P 		503.3
(1.3)
P 		372.9
(-3)
P 		448
(-0.5)
P 		527.4
(2.1)
P 		556.2
(3)
P 		183
C 613.5
(3)
P 		466.9
(-0.7)
P 		475.5
(-0.5)
P 		375.5
(-3)
P 		573.2
(2)
P 		563.5
(1.7)
P 		238
avr 494.9
(1.5) 		528.2
(3) 		392
(-3) 		441.7
(-0.8) 		528
(3) 		497.9
(1.7) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23185
Sequence Type Exemplar sequence
Representative Public ID C69942 NCBI
Target Description C69942 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M28.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69942 /WB_GENE_ID=M28.6 /WP=CE02284 /CHR=2 /FEA=Genomic Cluster /DEF=esterase; C.elegans cDNA clone yk370b6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063898 NCBI Caenorhabditis elegans M28.6 (esterase) mRNA, complete cds. 11/11 None
M28.6 ENSEMBL cdna:known chromosome:CEL140:II:10652263:10657712:-1 gene:M28.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10652287-10657577(-) 96.99 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl M28.6
Entrez Gene 174644 Entrez gene
SwissProt Q21569 EMBL-EBI
WormBase CE02284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90128 Hypothetical protein M28.6 [Caenorhabditis elegans] ref|NP_496299.1| M28.6 [Caenorhabditis elegans] 0.0
blast CAE59629 Hypothetical protein CBG03042 [Caenorhabditis briggsae] 0.0
blast CAA88435 Hypothetical protein ZK945.1 [Caenorhabditis elegans] ref|NP_496176.1| ZK945.1 [Caenorhabditis elegans] sp|Q09621|YS81_CAEEL Hypothetical protein ZK945.1 in chromosome II 3.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 4.0E-71
Sequence
Target Sequence 
>C. ELEGANS:173634_AT
ttcattttttaattagtgattccatatagttttaagatatatcccaaatcatcccgcgtg
ttctttgtacagtccgtttttaattcattcattccaagtgtcgttctctcaatgttgaag
cttcttcccccgtaattaactgaccgagtgaccccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTTTTTAATTAGTGATTCCAT 612 687 1320 Antisense
TAGTGATTCCATATAGTTTTAAGAT 94 655 1333 Antisense
AAGATATATCCCAAATCATCCCGCG 36 157 1353 Antisense
GTACAGTCCGTTTTTAATTCATTCA 167 461 1386 Antisense
GTCCGTTTTTAATTCATTCATTCCA 510 475 1391 Antisense
TCATTCATTCCAAGTGTCGTTCTCT 327 619 1404 Antisense
TCCAAGTGTCGTTCTCTCAATGTTG 310 587 1412 Antisense
AGTGTCGTTCTCTCAATGTTGAAGC 203 59 1416 Antisense
TCTCAATGTTGAAGCTTCTTCCCCC 358 613 1426 Antisense
TCCCCCGTAATTAACTGACCGAGTG 696 593 1445 Antisense
TAATTAACTGACCGAGTGACCCCAC 576 321 1452 Antisense
Sequence Source Affymetrix Proprietary Database