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[173633_at]

Description CEK133FZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F10G7.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D65256 /WB_GENE_ID=F10G7.9 /WP=CE04367 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133f12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 83      6grp_total > 76      4grp_total > 14      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 395.3
(2.3)
P 		176.2
(-3)
P 		189.7
(-2.7)
P 		423.4
(3)
P 		247
B 408.7
(0.8)
P 		269.9
(-1.7)
P 		203.1
(-3)
P 		523.7
(3)
P 		321
C 449.4
(2)
P 		196.8
(-3)
P 		301.7
(-0.9)
P 		500.2
(3)
P 		303
avr 417.8
(1.6) 		214.3
(-3) 		231.5
(-2.6) 		482.4
(3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 377.4
(-1)
P 		484
(2.1)
P 		349.4
(-1.9)
P 		310.7
(-3)
P 		499.4
(2.6)
P 		513.7
(3)
P 		203
B 465.9
(-3)
P 		562.5
(0.1)
P 		534
(-0.8)
P 		654.1
(3)
P 		489.3
(-2.3)
P 		651.9
(2.9)
P 		188
C 271.5
(-3)
P 		477.3
(-0.2)
P 		305.7
(-2.5)
P 		489
(0)
P 		377.8
(-1.5)
P 		706.3
(3)
P 		435
avr 371.6
(-3) 		507.9
(0.2) 		396.4
(-2.4) 		484.6
(-0.3) 		455.5
(-1) 		624
(3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 143.9
(3)
P 		38.3
(-3)
P 		49.6
(-2.4)
P 		62
(-1.7)
P 		106
B 130.3
(3)
P 		66.7
(-1.6)
P 		47.1
(-3)
P 		111.6
(1.7)
P 		83
C 148.8
(3)
P 		56.6
(-3)
P 		105.1
(0.2)
P 		84.3
(-1.2)
P 		92
avr 141
(3) 		53.9
(-3) 		67.3
(-2.1) 		86
(-0.8) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 69.6
(-3)
P 		172.1
(3)
P 		76.1
(-2.6)
P 		78.8
(-2.5)
P 		150.7
(1.7)
P 		125.1
(0.2)
P 		103
B 162.1
(-1.3)
P 		187.2
(0)
P 		129.7
(-3)
P 		173.3
(-0.7)
P 		198.8
(0.7)
P 		243.1
(3)
P 		113
C 100.6
(-2.1)
P 		145.6
(-0.4)
P 		77.8
(-3)
P 		98.3
(-2.2)
P 		122.2
(-1.3)
P 		236.4
(3)
P 		159
avr 110.8
(-2.1) 		168.3
(1.1) 		94.5
(-3) 		116.8
(-1.7) 		157.2
(0.5) 		201.5
(3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23686
Sequence Type Exemplar sequence
Representative Public ID CEK133FZR NCBI
Target Description CEK133FZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F10G7.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D65256 /WB_GENE_ID=F10G7.9 /WP=CE04367 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182184 NCBI Caenorhabditis elegans F10G7.9b (F10G7.9) mRNA, complete cds. 11/11 None
F10G7.9b.1 ENSEMBL cdna:known chromosome:CEL140:II:4703246:4706475:-1 gene:F10G7.9 11/11 None
F10G7.9b.2 ENSEMBL cdna:known chromosome:CEL140:II:4703246:4706414:-1 gene:F10G7.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062437 4/11 Cross Hyb Matching Probes None
GENEFINDER00000005212 4/11 Cross Hyb Matching Probes None
F10G7.9a 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173810 2 1 NM_182184 173633_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4703268-4706534(-) 100.0 100.0
Public Domain and Genome References
Ensembl F10G7.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_871984 F10G7.9b [Caenorhabditis elegans] gb|AAN65326.1| Hypothetical protein F10G7.9b [Caenorhabditis elegans] 0.0
blast NP_494838 F10G7.9a [Caenorhabditis elegans] gb|AAN65325.1| Hypothetical protein F10G7.9a [Caenorhabditis elegans] 0.0
blast A88131 protein F10G7.9 [imported] - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:173633_AT
atggatcaattcttcaatgtggtcattcgtcagacaccagaatacaaaagcaagttgttc
gcttttttcgccaatcggcgatgaaccggacgagaaaatggataggatgtagtaaaaatc
gaggaaaatcaaaagtagaactcgctagacatttttaaaaattccagttattttcttttt
aaatcaatttctttactgaaacggtgtgatctctacaaatcaagctgacgttcaaactgt
catatcaatttgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATCAATTCTTCAATGTGGTCA 673 51 2197 Antisense
AATGTGGTCATTCGTCAGACACCAG 51 163 2212 Antisense
GTCATTCGTCAGACACCAGAATACA 530 467 2218 Antisense
TTCGCTTTTTTCGCCAATCGGCGAT 515 691 2254 Antisense
GCCAATCGGCGATGAACCGGACGAG 526 273 2266 Antisense
GGCGATGAACCGGACGAGAAAATGG 463 541 2273 Antisense
GTAGAACTCGCTAGACATTTTTAAA 527 457 2331 Antisense
TTTACTGAAACGGTGTGATCTCTAC 352 673 2388 Antisense
GATCTCTACAAATCAAGCTGACGTT 506 417 2404 Antisense
AAGCTGACGTTCAAACTGTCATATC 373 149 2418 Antisense
TTCAAACTGTCATATCAATTTGCCT 335 685 2427 Antisense
Sequence Source Affymetrix Proprietary Database