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[173631_at]

Description CEK025H9R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F29D11.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33079 /WB_GENE_ID=F29D11.2 /WP=CE09790 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 75      6grp_total > 38      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 725
1 2 3 4 range
A 920.1
(3)
P 		646.8
(0.3)
P 		794
(1.8)
P 		305.1
(-3)
P 		615
B 835.8
(3)
P 		709.5
(1.2)
P 		589
(-0.5)
P 		412.4
(-3)
P 		423
C 1030
(3)
P 		620.3
(-0.6)
P 		728.3
(0.4)
P 		342.9
(-3)
P 		687
avr 928.6
(3) 		658.9
(0.2) 		703.8
(0.7) 		353.5
(-3) 		575

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 759
1 2 3 4 5 6 range
A 1314
(3)
P 		830.3
(-0.8)
P 		555.2
(-3)
P 		583.6
(-2.8)
P 		1146.5
(1.7)
P 		895.7
(-0.3)
P 		759
B 1123.7
(1.2)
P 		909.3
(-1.3)
P 		758.9
(-3)
P 		811.6
(-2.4)
P 		758.6
(-3)
P 		1280.5
(3)
P 		522
C 880.7
(-0.2)
P 		1151.6
(3)
P 		814.3
(-0.9)
P 		755.1
(-1.6)
P 		637.8
(-3)
P 		886.6
(-0.1)
P 		514
avr 1106.1
(3) 		963.7
(0.8) 		709.5
(-3) 		716.8
(-2.9) 		847.6
(-0.9) 		1020.9
(1.7) 		397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 335
(3)
P 		140.4
(-1)
P 		207.6
(0.4)
P 		44.7
(-3)
P 		290
B 266.5
(3)
P 		175.2
(-0.1)
P 		136.5
(-1.4)
P 		87.9
(-3)
P 		179
C 340.9
(3)
P 		178.3
(-0.4)
P 		253.8
(1.2)
P 		57.8
(-3)
P 		283
avr 314.1
(3) 		164.6
(-0.6) 		199.3
(0.3) 		63.5
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 242.2
(0.2)
P 		295.3
(1.6)
P 		120.9
(-3)
P 		148
(-2.3)
P 		346
(3)
P 		218.1
(-0.4)
P 		225
B 391
(1.2)
P 		302.7
(-0.6)
P 		184.3
(-3)
P 		215
(-2.4)
P 		308.2
(-0.5)
P 		477.5
(3)
P 		293
C 326.4
(2.2)
P 		351.4
(3)
P 		207.2
(-1.3)
P 		151.8
(-3)
P 		206.4
(-1.4)
P 		296.8
(1.4)
P 		200
avr 319.9
(2.6) 		316.5
(2.5) 		170.8
(-3) 		171.6
(-3) 		286.9
(1.4) 		330.8
(3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22646
Sequence Type Exemplar sequence
Representative Public ID CEK025H9R NCBI
Target Description CEK025H9R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F29D11.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33079 /WB_GENE_ID=F29D11.2 /WP=CE09790 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059727 NCBI Caenorhabditis elegans F29D11.2 (F29D11.2) mRNA, complete cds. 11/11 None
F29D11.2 ENSEMBL cdna:known chromosome:CEL140:I:7642632:7647907:-1 gene:F29D11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014037 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7642574-7647822(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29D11.2
Entrez Gene 172521 Entrez gene
SwissProt Q93598 EMBL-EBI
WormBase CE09790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01707 Hypothetical protein F29D11.2 [Caenorhabditis elegans] emb|CAA98126.1| Hypothetical protein F29D11.2 [Caenorhabditis elegans] ref|NP_492128.1| F29D11.2 [Caenorhabditis elegans] 0.0
blast CAE66552 Hypothetical protein CBG11864 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173631_AT
aattgacttgtgcttttcgatctcgttatttattaccacttacattttaacctttttttc
ctcgaacacgtttcccaatttttatgaatttaaataactttaccttttccgccatatttc
ttaattctctaatttcatttcctagaaattatttattcgactatacaaaccacccaacaa
taatgcaaaattctccacttggtctcttcatattcatcatcattattaccctacatgcaa
ctaaggcattcgatgtaaagttttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGACTTGTGCTTTTCGATCTCG 243 177 3491 Antisense
GATCTCGTTATTTATTACCACTTAC 489 419 3509 Antisense
TTTTCCGCCATATTTCTTAATTCTC 384 677 3595 Antisense
TTCTTAATTCTCTAATTTCATTTCC 674 687 3608 Antisense
TATTCGACTATACAAACCACCCAAC 266 663 3644 Antisense
ACAAACCACCCAACAATAATGCAAA 637 109 3655 Antisense
GCAAAATTCTCCACTTGGTCTCTTC 379 319 3675 Antisense
TGGTCTCTTCATATTCATCATCATT 199 553 3690 Antisense
ATTCATCATCATTATTACCCTACAT 627 11 3702 Antisense
ACCCTACATGCAACTAAGGCATTCG 663 89 3718 Antisense
AGGCATTCGATGTAAAGTTTTCTTT 193 55 3734 Antisense
Sequence Source Affymetrix Proprietary Database