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[173630_s_at]

Description CEK019A7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T12E12.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32582 /WB_GENE_ID=T12E12.2 /WP=CE13585 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19a7 : 3prime end, single read.
Cluster 6grp_total > 49      4grp_total > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 133.6
(3)
P 		78.1
(-3)
A 		111.3
(0.6)
A 		83.7
(-2.4)
A 		56
B 205.6
(3)
P 		67.4
(-3)
A 		77.1
(-2.6)
A 		95.6
(-1.8)
P 		138
C 125
(3)
P 		79.6
(-2.8)
A 		124.8
(3)
A 		78.1
(-3)
A 		47
avr 154.7
(3) 		75
(-3) 		104.4
(-0.8) 		85.8
(-2.2) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 170.4
(0.7)
P 		133.1
(-1)
P 		90.1
(-3)
A 		148.9
(-0.3)
A 		127.3
(-1.3)
P 		220
(3)
P 		130
B 176.7
(3)
P 		139.2
(0.9)
P 		67.2
(-3)
A 		126.9
(0.3)
P 		142.2
(1.1)
P 		150.9
(1.6)
P 		110
C 220
(3)
P 		143.2
(-0.8)
A 		99.8
(-3)
M 		127.8
(-1.6)
A 		182.3
(1.1)
P 		155.2
(-0.2)
P 		120
avr 189
(3) 		138.5
(0.1) 		85.7
(-3) 		134.5
(-0.2) 		150.6
(0.8) 		175.4
(2.2) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 48.7
(3)
P 		16.9
(-2.2)
A 		29.1
(-0.2)
A 		12.2
(-3)
A 		37
B 65.6
(3)
P 		16.6
(-3)
A 		17.9
(-2.8)
A 		20.4
(-2.5)
P 		49
C 41.4
(2.6)
P 		22.9
(-1.1)
A 		43.5
(3)
A 		13.2
(-3)
A 		30
avr 51.9
(3) 		18.8
(-2.4) 		30.2
(-0.6) 		15.3
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 31.4
(-0.9)
P 		47.4
(1.9)
P 		19.6
(-3)
A 		37.8
(0.2)
A 		38.4
(0.3)
P 		53.6
(3)
P 		34
B 61.5
(3)
P 		46.3
(1)
P 		16.3
(-3)
A 		33.6
(-0.7)
P 		57.8
(2.5)
P 		56.3
(2.3)
P 		45
C 81.5
(3)
P 		43.7
(-1)
A 		25.4
(-3)
M 		25.7
(-3)
A 		59
(0.6)
P 		52
(-0.2)
P 		56
avr 58.1
(3) 		45.8
(1) 		20.4
(-3) 		32.4
(-1.1) 		51.7
(2) 		54
(2.3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173630_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25021
Sequence Type Exemplar sequence
Representative Public ID CEK019A7R NCBI
Target Description CEK019A7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T12E12.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32582 /WB_GENE_ID=T12E12.2 /WP=CE13585 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068427 NCBI Caenorhabditis elegans T12E12.2 (T12E12.2) mRNA, complete cds. 11/11 None
SNAP00000021915 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5544847:5548133:1 11/11 None
GENEFINDER00000021924 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5544847:5548133:1 11/11 None
T12E12.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:5544847:5548436:1 gene:T12E12.2 11/11 None
T12E12.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:5544847:5548584:1 gene:T12E12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5544853-5548140(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12E12.2
Entrez Gene 177338 Entrez gene
SwissProt Q22430 EMBL-EBI
WormBase CE13585 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03120 Hypothetical protein T12E12.2 [Caenorhabditis elegans] ref|NP_500828.1| T12E12.2 [Caenorhabditis elegans] 0.0
blast CAE72697 Hypothetical protein CBG19921 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000953 EMBL-EBI Chromo 2.1E-7
Sequence
Target Sequence 
>C. ELEGANS:173630_S_AT
gatcttctcgcgtatgggaggacgatggaagattaggagggatctcacatatcctcacat
tcttcgatgttcacctctcagcaacaagtccaacggtggtgatggaactcatcaagtatt
gagttgtcttttttatcccgaagcgatcggatatcgtgatggtttggagaactctaaagg
agccgacactgaaaaaattgatgagctgaaaacaagtcaaaagcgatacaagaagatgat
cgaggaagggaagggtcgacttgttctcgccttatatcgaattgacattgagtttcgctg
taatctggccgaaaaggagcagttttctttgccaaaattcactctgatcgaaagtgatga
cgggttcaaaattgaaaagttgacgttgctccgtcaaacggaaggtctcacttgttacga
agccgacataggaatgttcgaaatgactccgttctcatcgccgggctgtcgatactttgg
tatttcggacaaagctcacgaaaaagatctagtggttcccggaaatgcgcatatcgagat
gagagcagaagttgatcagccgataagctttgtcactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCTCGCGTATGGGAGGACGA 559 419 2081 Antisense
TCACATATCCTCACATTCTTCGATG 461 627 2125 Antisense
GTTGTCTTTTTTATCCCGAAGCGAT 57 431 2203 Antisense
CGACTTGTTCTCGCCTTATATCGAA 509 251 2337 Antisense
TTGAGTTTCGCTGTAATCTGGCCGA 467 695 2368 Antisense
TCTTTGCCAAAATTCACTCTGATCG 568 615 2406 Antisense
TCCGTCAAACGGAAGGTCTCACTTG 654 591 2470 Antisense
GTCTCACTTGTTACGAAGCCGACAT 513 469 2485 Antisense
GTTCGAAATGACTCCGTTCTCATCG 252 443 2516 Antisense
GGTTCCCGGAAATGCGCATATCGAG 4 507 2594 Antisense
GATCAGCCGATAAGCTTTGTCACTC 41 421 2634 Antisense
Sequence Source Affymetrix Proprietary Database