[Home] | [Total List]

[173628_at]

Description C45573 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y55F3AM.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45573 /WB_GENE_ID=Y55F3AM.12 /WP=CE22543 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk399e11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 92      6grp_total > 59      4grp_total > 63      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 491
(3)
P 		210.1
(-3)
P 		382.1
(0.7)
P 		275.4
(-1.6)
P 		281
B 283.2
(1.6)
P 		185.2
(-3)
P 		312.1
(3)
P 		303.2
(2.6)
P 		127
C 368.7
(0.9)
P 		277.3
(-2.4)
P 		428.8
(3)
P 		260.1
(-3)
P 		169
avr 381
(3) 		224.2
(-3) 		374.3
(2.7) 		279.6
(-0.9) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 176
(-3)
P 		274.6
(-1.5)
P 		177.1
(-3)
P 		307.9
(-1)
P 		276.1
(-1.5)
P 		575
(3)
P 		399
B 323.5
(3)
P 		227.2
(-1)
P 		178.7
(-3)
P 		254.5
(0.1)
P 		313.9
(2.6)
P 		315.1
(2.7)
P 		145
C 500.5
(3)
P 		237.6
(-2.3)
P 		294.5
(-1.2)
P 		202.9
(-3)
P 		382.8
(0.6)
P 		318.7
(-0.7)
P 		298
avr 333.3
(0.8) 		246.5
(-2) 		216.8
(-3) 		255.1
(-1.8) 		324.3
(0.5) 		402.9
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 178.8
(3)
P 		45.6
(-2.8)
P 		99.9
(-0.4)
P 		40.3
(-3)
P 		139
B 90.3
(3)
P 		45.7
(-3)
P 		72.3
(0.6)
P 		64.6
(-0.5)
P 		45
C 122
(1.4)
P 		79.7
(-1)
P 		149.4
(3)
P 		43.9
(-3)
P 		106
avr 130.4
(3) 		57
(-2.5) 		107.2
(1.3) 		49.6
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 32.5
(-3)
P 		97.7
(0.6)
P 		38.6
(-2.7)
P 		78.1
(-0.5)
P 		83.3
(-0.2)
P 		140
(3)
P 		108
B 112.6
(1.9)
P 		75.6
(-0.7)
P 		43.4
(-3)
P 		67.4
(-1.3)
P 		127.5
(3)
P 		117.5
(2.3)
P 		84
C 185.5
(3)
P 		72.5
(-1.7)
P 		75
(-1.6)
P 		40.8
(-3)
P 		123.9
(0.4)
P 		106.7
(-0.3)
P 		145
avr 110.2
(2) 		81.9
(-0.4) 		52.3
(-3) 		62.1
(-2.1) 		111.6
(2.1) 		121.4
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24988
Sequence Type Exemplar sequence
Representative Public ID C45573 NCBI
Target Description C45573 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y55F3AM.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45573 /WB_GENE_ID=Y55F3AM.12 /WP=CE22543 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk399e11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067629 NCBI Caenorhabditis elegans mRNA DeCAPping enzyme family member (dcap-1) (dcap-1) mRNA, complete cds. 11/11 None
Y55F3AM.12 ENSEMBL cdna:known chromosome:CEL140:IV:1052586:1054796:-1 gene:Y55F3AM.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1052602-1054793(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dcap-1
Ensembl Y55F3AM.12
Entrez Gene 176924 Entrez gene
SwissProt Q9N363 EMBL-EBI
WormBase CE22543 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16555.1.S1_AT similar to MAD homolog 4 interacting transcription coactivator 1 cfa
CANINE_2:CFAAFFX.13647.1.S1_AT similar to MAD homolog 4 interacting transcription coactivator 1 cfa
DROSOPHILA_2:1636243_AT dm
DROSGENOME1:151984_AT dm
CHICKEN:GGA.14062.1.S1_S_AT decapping enzyme gga
HG-U133_PLUS_2:218508_AT decapping enzyme hs
HG-U133A:218508_AT decapping enzyme hs
HG-FOCUS:218508_AT decapping enzyme hs
HG-U133A_2:218508_AT decapping enzyme hs
HU35KSUBC:RC_AA369027_AT decapping enzyme hs
U133_X3P:G8923766_3P_AT decapping enzyme hs
HG-U95B:46655_AT decapping enzyme hs
HG-U95E:68942_AT decapping enzyme hs
HG-U95E:79518_F_AT Decapping enzyme hs
HU35KSUBC:RC_AA071188_AT Decapping enzyme hs
HU35KSUBC:RC_F04405_AT Decapping enzyme hs
MOE430A:1422131_AT decapping enzym mm
MOUSE430A_2:1422131_AT decapping enzym mm
MOUSE430_2:1422131_AT decapping enzym mm
MOUSE430A_2:1431933_A_AT decapping enzym mm
MOE430A:1431933_A_AT decapping enzym mm
MOUSE430_2:1431933_A_AT decapping enzym mm
MU11KSUBA:AA426926_S_AT decapping enzym mm
MG-U74AV2:96223_AT decapping enzym mm
MOE430A:1433606_AT decapping enzym mm
MOUSE430A_2:1433606_AT decapping enzym mm
MOUSE430_2:1433606_AT decapping enzym mm
MU19KSUBB:TC29363_AT Decapping enzym (Dcp1a), mRNA mm
MU19KSUBB:TC33387_AT Decapping enzym (Dcp1a), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAF60791 Mrna decapping enzyme protein 1 [Caenorhabditis elegans] ref|NP_500030.1| mRNA DeCAPping enzyme family member (dcap-1) [Caenorhabditis elegans] 1.0E-150
blast CAE63856 Hypothetical protein CBG08416 [Caenorhabditis briggsae] 1.0E-118
blast AAX94785 GH04763p [Drosophila melanogaster] 3.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR010334 EMBL-EBI Dcp1-like decapping 6.9E-73
Sequence
Target Sequence 
>C. ELEGANS:173628_AT
ttctcatttttctgctaaaaatcctaattttccccgatatttccctgatttcttgctggt
ttttgagtgaaaaaatcaaaattttctccgattttttgctaagaaatttttttttccgat
ttttcctgtgaagatttccaattttttgctcgaaaaatcccattttccctctatttttcc
cactttccatattttttcaacgaatatttttttgtgaatattgtgtgattcctcctgagc
ccttttgctcatttttccccataaaattgtccatattttgttcactgaatgggtctccct
attgatgatatctcaaaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCATTTTTCTGCTAAAAATCCT 237 691 1034 Antisense
GATATTTCCCTGATTTCTTGCTGGT 331 427 1069 Antisense
CCCTGATTTCTTGCTGGTTTTTGAG 654 257 1076 Antisense
TCAAAATTTTCTCCGATTTTTTGCT 633 627 1109 Antisense
GATTTTTCCTGTGAAGATTTCCAAT 463 427 1151 Antisense
TCCCACTTTCCATATTTTTTCAACG 176 597 1211 Antisense
GAATATTGTGTGATTCCTCCTGAGC 38 327 1249 Antisense
TTTTTCCCCATAAAATTGTCCATAT 323 675 1285 Antisense
TTTGTTCACTGAATGGGTCTCCCTA 696 665 1310 Antisense
TGGGTCTCCCTATTGATGATATCTC 696 553 1323 Antisense
CCCTATTGATGATATCTCAAACCAC 537 255 1330 Antisense
Sequence Source Affymetrix Proprietary Database