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[173626_s_at]

Description CEK003AXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F29G6.3A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27724 /WB_GENE_ID=F29G6.3A /WP=CE18654 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 10      6grp_total > 25      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 699
1 2 3 4 range
A 1950
(3)
P 		1760.6
(0.8)
P 		1647.4
(-0.5)
P 		1426.1
(-3)
P 		524
B 1836.7
(3)
P 		1494.8
(-3)
P 		1680.7
(0.3)
P 		1548.3
(-2.1)
P 		342
C 1832.6
(2.6)
P 		1735.7
(1.7)
P 		1871.1
(3)
P 		1251
(-3)
P 		620
avr 1873.1
(3) 		1663.7
(0.3) 		1733.1
(1.2) 		1408.5
(-3) 		465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1284
1 2 3 4 5 6 range
A 1865.2
(3)
P 		1493.7
(0.9)
P 		1411.4
(0.4)
P 		798.2
(-3)
P 		994
(-1.9)
P 		1132.8
(-1.1)
P 		1067
B 1966.5
(3)
P 		1699.3
(1.8)
P 		1209.1
(-0.5)
P 		1098.6
(-1.1)
P 		682.5
(-3)
P 		1089.8
(-1.1)
P 		1284
C 1592.3
(3)
P 		1439.4
(1.8)
P 		1000.9
(-1.8)
P 		851
(-3)
P 		963.3
(-2.1)
P 		975.9
(-2)
P 		741
avr 1808
(3) 		1544.1
(1.3) 		1207.1
(-0.9) 		915.9
(-2.8) 		879.9
(-3) 		1066.2
(-1.8) 		928
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 501
1 2 3 4 range
A 710
(3)
P 		382.2
(-0.9)
P 		430.7
(-0.3)
P 		208.8
(-3)
P 		501
B 585.7
(3)
P 		369.2
(-2.1)
P 		389.5
(-1.6)
P 		329.9
(-3)
P 		256
C 606.6
(2.4)
P 		499
(0.9)
P 		652.1
(3)
P 		210.9
(-3)
P 		441
avr 634.1
(3) 		416.8
(-0.4) 		490.8
(0.8) 		249.9
(-3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 343.8
(-0.4)
P 		531.2
(3)
P 		307.4
(-1.1)
P 		202.4
(-3)
P 		299.9
(-1.2)
P 		275.8
(-1.7)
P 		329
B 684.2
(3)
P 		565.6
(1.3)
P 		293.6
(-2.8)
P 		291
(-2.8)
P 		277.3
(-3)
P 		406.4
(-1.1)
P 		407
C 590.2
(3)
P 		439.2
(0.8)
P 		254.7
(-1.8)
P 		171.1
(-3)
P 		311.7
(-1)
P 		326.7
(-0.8)
P 		419
avr 539.4
(3) 		512
(2.5) 		285.2
(-1.8) 		221.5
(-3) 		296.3
(-1.6) 		336.3
(-0.8) 		318
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173626_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25798
Sequence Type Exemplar sequence
Representative Public ID CEK003AXR NCBI
Target Description CEK003AXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F29G6.3A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27724 /WB_GENE_ID=F29G6.3A /WP=CE18654 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029443(11), NM_077521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029443 NCBI Caenorhabditis elegans F29G6.3c (F29G6.3) mRNA, complete cds. 11/11 None
NM_077521 NCBI Caenorhabditis elegans F29G6.3a (F29G6.3) mRNA, complete cds. 11/11 A 
SNAP00000010620 ENSEMBL cdna:SNAP chromosome:CEL140:X:11511659:11518861:-1 11/11 None
GENEFINDER00000010622 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11511659:11518861:-1 11/11 None
F29G6.3c.1 ENSEMBL cdna:known chromosome:CEL140:X:11511484:11518938:-1 gene:F29G6.3 11/11 A 
F29G6.3c.2 ENSEMBL cdna:known chromosome:CEL140:X:11511542:11518938:-1 gene:F29G6.3 11/11 A 
F29G6.3a ENSEMBL cdna:known chromosome:CEL140:X:11511659:11518938:-1 gene:F29G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181340 3 2 NM_001029443 171853_x_at (9), 173626_s_at (11)
NM_077521 173626_s_at (11)
NM_077522 171766_x_at (11), 172455_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11511659-11518939(-) 100.0 100.0
Public Domain and Genome References
Ensembl F29G6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10796 Hypothetical protein F29G6.3c [Caenorhabditis elegans] ref|NP_001024614.1| F29G6.3c [Caenorhabditis elegans] 0.0
blast CAB01754 Hypothetical protein F29G6.3b [Caenorhabditis elegans] ref|NP_509923.1| F29G6.3b [Caenorhabditis elegans] 0.0
blast CAB01755 Hypothetical protein F29G6.3a [Caenorhabditis elegans] ref|NP_509922.2| F29G6.3a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004019 EMBL-EBI YLP motif 5.8
Pfam IPR004019 EMBL-EBI YLP motif 36.0
Pfam IPR004019 EMBL-EBI YLP motif 2.9
Pfam IPR004019 EMBL-EBI YLP motif 73.0
Pfam IPR004019 EMBL-EBI YLP motif 28.0
Sequence
Target Sequence 
>C. ELEGANS:173626_S_AT
tccatcgagaccatcaagtgttgctaattatgtcaagcaccagccacattctcgcacctc
gacggtgagcactgttcgtggagctccagttcaaggtgtcaatccaactgttcaacagca
tgttatttacaatccatacggagaccatcaatctgttcgtgtcgtgaaaaatgttcgaga
gtttgtcaacgtttttggagcaactcacgttgttccaccaccaactcctcttgctggagt
gccacgactttcccaaagaagcccaatttctcatgaaacattccaaccgcatgatgagtg
caactctgtgaaatcttctcgtaaaaacacattagtttcggttggaaaaggaatccaaat
taatgaggctccacgcaaatcaacttgttcatctgttgcctcttctcgctcgtcatctgt
ctccactgtttctgctccaattcttgttggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATCGAGACCATCAAGTGTTGCT 224 591 5173 Antisense
ATTATGTCAAGCACCAGCCACATTC 373 13 5199 Antisense
CGCACCTCGACGGTGAGCACTGTTC 414 251 5225 Antisense
TGAGCACTGTTCGTGGAGCTCCAGT 555 567 5238 Antisense
GACCATCAATCTGTTCGTGTCGTGA 486 383 5315 Antisense
GTCAACGTTTTTGGAGCAACTCACG 492 463 5357 Antisense
CACGACTTTCCCAAAGAAGCCCAAT 404 105 5415 Antisense
GAAACATTCCAACCGCATGATGAGT 159 357 5447 Antisense
TGAGTGCAACTCTGTGAAATCTTCT 572 567 5467 Antisense
TCAACTTGTTCATCTGTTGCCTCTT 238 631 5552 Antisense
GTTTCTGCTCCAATTCTTGTTGGTG 327 451 5600 Antisense
Sequence Source Affymetrix Proprietary Database