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[173625_s_at]

Description CEK036A8R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F08A10.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33778 /WB_GENE_ID=F08A10.1 /WP=CE24883 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 60      6grp_total > 02      4grp_total > 13      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 680
1 2 3 4 range
A 622.3
(1.2)
P 		319.9
(-2)
P 		227.7
(-3)
P 		788.9
(3)
P 		561
B 569.3
(-0.1)
P 		344.1
(-2.1)
P 		249.2
(-3)
P 		907.6
(3)
P 		658
C 615.7
(0.2)
P 		359.6
(-2.5)
P 		312.8
(-3)
P 		875.1
(3)
P 		562
avr 602.4
(0.4) 		341.2
(-2.2) 		263.2
(-3) 		857.2
(3) 		594

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 459.2
(1.3)
P 		539.7
(3)
P 		349.9
(-1.1)
P 		352.1
(-1)
P 		331.6
(-1.4)
P 		259
(-3)
P 		281
B 543.7
(0.7)
P 		682.5
(3)
P 		342.3
(-2.7)
P 		327
(-3)
P 		447.3
(-1)
P 		338.7
(-2.8)
P 		356
C 541.7
(3)
P 		520.3
(2.4)
P 		310.1
(-3)
P 		323.5
(-2.7)
P 		375.4
(-1.3)
P 		396.4
(-0.8)
P 		232
avr 514.9
(1.4) 		580.8
(3) 		334.1
(-2.9) 		334.2
(-2.9) 		384.8
(-1.7) 		331.4
(-3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 226.6
(3)
P 		69.5
(-2.6)
P 		59.5
(-3)
P 		115.5
(-1)
P 		167
B 181.6
(2.5)
P 		85
(-1.8)
P 		57.7
(-3)
P 		193.4
(3)
P 		136
C 203.8
(3)
P 		103.4
(-3)
P 		109
(-2.7)
P 		147.5
(-0.4)
P 		100
avr 204
(3) 		86
(-2.5) 		75.4
(-3) 		152.1
(0.6) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 84.6
(-2)
P 		191.9
(3)
P 		76.2
(-2.4)
P 		89.3
(-1.8)
P 		100.1
(-1.3)
P 		63.1
(-3)
P 		129
B 189.2
(1.4)
P 		227.2
(3)
P 		83.1
(-3)
P 		86.6
(-2.9)
P 		181.7
(1.1)
P 		126.3
(-1.2)
P 		144
C 200.8
(3)
P 		158.8
(1.1)
P 		78.9
(-2.4)
P 		65.1
(-3)
P 		121.5
(-0.5)
P 		132.7
(-0)
P 		136
avr 158.2
(1.2) 		192.6
(3) 		79.4
(-3) 		80.3
(-3) 		134.4
(-0.1) 		107.4
(-1.5) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173625_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22764
Sequence Type Exemplar sequence
Representative Public ID CEK036A8R NCBI
Target Description CEK036A8R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F08A10.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33778 /WB_GENE_ID=F08A10.1 /WP=CE24883 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025916(11), NM_059833(11), NM_181992(10), NM_181991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025916 NCBI Caenorhabditis elegans F08A10.1d (F08A10.1) mRNA, complete cds. 11/11 None
NM_059833 NCBI Caenorhabditis elegans F08A10.1a (F08A10.1) mRNA, complete cds. 11/11 None
NM_181992 NCBI Caenorhabditis elegans F08A10.1c (F08A10.1) mRNA, complete cds. 10/11 None
NM_181991 NCBI Caenorhabditis elegans F08A10.1b (F08A10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000000266 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8211817:8216682:1 10/11 None
SNAP00000000250 ENSEMBL cdna:SNAP chromosome:CEL140:I:8213434:8216682:1 10/11 None
F08A10.1d ENSEMBL cdna:known chromosome:CEL140:I:8204184:8216865:1 gene:F08A10.1 11/11 None
F08A10.1a ENSEMBL cdna:known chromosome:CEL140:I:8204184:8216611:1 gene:F08A10.1 11/11 None
F08A10.1c ENSEMBL cdna:known chromosome:CEL140:I:8213586:8216863:1 gene:F08A10.1 10/11 None
F08A10.1b ENSEMBL cdna:known chromosome:CEL140:I:8213727:8216611:1 gene:F08A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8204116-8216543(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08A10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04714 Hypothetical protein F08A10.1d [Caenorhabditis elegans] emb|CAH10785.1| Hypothetical protein F08A10.1d [Caenorhabditis elegans] ref|NP_001021087.1| F08A10.1d [Caenorhabditis elegans] 0.0
blast CAA99825 Hypothetical protein F08A10.1a [Caenorhabditis elegans] emb|CAB70244.3| Hypothetical protein F08A10.1a [Caenorhabditis elegans] ref|NP_492234.2| F08A10.1a [Caenorhabditis elegans] 0.0
blast CAD56594 Hypothetical protein F08A10.1b [Caenorhabditis elegans] ref|NP_871791.1| F08A10.1b [Caenorhabditis elegans] 0.0
blast CAD56595 Hypothetical protein F08A10.1c [Caenorhabditis elegans] ref|NP_871792.1| F08A10.1c [Caenorhabditis elegans] 0.0
blast T24361 hypothetical protein T02E1.8 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
scop a.1.1.Nerve tissue mini-hemoglobin (neural globin) All alpha proteins; Globin-like; Globin-like; Nerve tissue mini-hemoglobin (neural globin) 8.39999961853027
Pfam IPR003931 EMBL-EBI Calcium-activated SK potassium channel 3.2E-25
Pfam IPR004178 EMBL-EBI Calmodulin binding domain 3.9E-50
Pfam IPR003931 EMBL-EBI Calcium-activated SK potassium channel 3.2E-25
Pfam IPR004178 EMBL-EBI Calmodulin binding domain 3.9E-50
Pfam IPR003931 EMBL-EBI Calcium-activated SK potassium channel 3.2E-25
Pfam IPR004178 EMBL-EBI Calmodulin binding domain 3.9E-50
Pfam IPR003931 EMBL-EBI Calcium-activated SK potassium channel 3.2E-25
Pfam IPR004178 EMBL-EBI Calmodulin binding domain 3.9E-50
Pfam IPR003931 EMBL-EBI Calcium-activated SK potassium channel 3.2E-25
Pfam IPR004178 EMBL-EBI Calmodulin binding domain 3.9E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021087.1 6 221-243,253-275,331-349,390-412,425-447,457-476
NP_492234.2 6 228-250,260-282,338-356,397-419,432-454,464-483
NP_871792.1 6 248-270,280-302,358-376,417-439,452-474,484-503
NP_871791.1 6 248-270,280-302,358-376,417-439,452-474,484-503
F08A10.1d 6 221-243,253-275,331-349,390-412,425-447,457-476
F08A10.1a 6 228-250,260-282,338-356,397-419,432-454,464-483
F08A10.1c 6 248-270,280-302,358-376,417-439,452-474,484-503
F08A10.1b 6 248-270,280-302,358-376,417-439,452-474,484-503
GENEFINDER00000000266 6 307-329,339-361,417-435,476-498,511-533,543-562
SNAP00000000250 6 311-333,343-365,421-439,480-502,515-537,547-566
Sequence
Target Sequence 
>C. ELEGANS:173625_S_AT
attccatttggcttgttgctatcacattcctctctgttggatatggtgacattgtcccga
aaacgaattgtggtcgaagtatggcaattgtcactggtattcttggtacttgtgcttctt
cgatggttgtcgcggttattgcgagaaagttggaattgacaagggcagagaagcatgtgc
acaatttcatgcaagacactcaacttactaagcaggtaaaacactcggctgctaacgtat
tgcgtgaaacctggtttatcttcaaattcagaaaattggtggaaaaaccagattttggaa
agattcgaaagcatcaacggaagatgcgtcgagtgagaagggatcagagaaagctagctg
aaaacttggtttctcttggagacgtggcaaaggcgtcatcaaatacctacgagcttgtgc
atgacgtccattcaacacaagaaggattgtcccttcgaataactgcaattgagcatcaat
tgagtgatatttcaagggaactttcttctctagctgagttgctcagaggtagcgtaatca
tcacgtcggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCATTTGGCTTGTTGCTATCAC 131 9 2155 Antisense
ATCACATTCCTCTCTGTTGGATATG 53 29 2175 Antisense
GGTGACATTGTCCCGAAAACGAATT 54 491 2199 Antisense
GGCAATTGTCACTGGTATTCTTGGT 253 533 2237 Antisense
TACTTGTGCTTCTTCGATGGTTGTC 61 645 2261 Antisense
ACACTCGGCTGCTAACGTATTGCGT 264 111 2375 Antisense
ACTTGGTTTCTCTTGGAGACGTGGC 14 103 2518 Antisense
AGCTTGTGCATGACGTCCATTCAAC 329 79 2566 Antisense
GGATTGTCCCTTCGAATAACTGCAA 151 509 2598 Antisense
CAAGGGAACTTTCTTCTCTAGCTGA 519 181 2647 Antisense
GGTAGCGTAATCATCACGTCGGATC 645 503 2682 Antisense
Sequence Source Affymetrix Proprietary Database