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[173624_at] actin

Description C70047 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K07C5.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70047 /WB_GENE_ID=K07C5.1 /WP=CE06111 /CHR=5 /FEA=Genomic Cluster /DEF=actin; C.elegans cDNA clone yk377e3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 19      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 65      6grp_total > 29      4grp_total > 60      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 1453
(1.7)
P 		1356.1
(0.4)
P 		1556
(3)
P 		1087.8
(-3)
P 		468
B 1491.3
(3)
P 		1234.4
(-1.3)
P 		1420.2
(1.8)
P 		1132.3
(-3)
P 		359
C 1491.4
(1.6)
P 		1225.9
(-0.5)
P 		1667.3
(3)
P 		918.8
(-3)
P 		749
avr 1478.6
(2.2) 		1272.1
(-0.3) 		1547.8
(3) 		1046.3
(-3) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 1372.5
(2.5)
P 		1375.8
(2.6)
P 		817.1
(-3)
P 		1137.9
(0.2)
P 		1420.1
(3)
P 		1347.8
(2.3)
P 		603
B 1411.9
(3)
P 		1232.5
(-0.3)
P 		1083.1
(-3)
P 		1281.3
(0.6)
P 		1393.5
(2.7)
P 		1095.3
(-2.8)
P 		329
C 1372.3
(1)
P 		1045.9
(-3)
P 		1530
(3)
P 		1209.5
(-1)
P 		1176.6
(-1.4)
P 		1146.4
(-1.8)
P 		484
avr 1385.6
(3) 		1218.1
(-1.1) 		1143.4
(-3) 		1209.6
(-1.4) 		1330.1
(1.6) 		1196.5
(-1.7) 		242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 529
(3)
P 		294.4
(-0.8)
P 		406.8
(1)
P 		159.2
(-3)
P 		370
B 475.6
(3)
P 		304.9
(-1.4)
P 		329.1
(-0.8)
P 		241.3
(-3)
P 		234
C 493.7
(1.8)
P 		352.5
(-0.2)
P 		581.1
(3)
P 		154.9
(-3)
P 		426
avr 499.4
(3) 		317.3
(-0.5) 		439
(1.8) 		185.1
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 253
(-1.6)
P 		489.3
(3)
P 		177.9
(-3)
P 		288.6
(-0.9)
P 		428.5
(1.8)
P 		328.1
(-0.1)
P 		311
B 491.3
(1.5)
P 		410.2
(-0.1)
P 		263
(-3)
P 		339.4
(-1.5)
P 		566.2
(3)
P 		408.4
(-0.1)
P 		303
C 508.7
(3)
P 		319.1
(-1.3)
P 		389.4
(0.3)
P 		243.2
(-3)
P 		380.7
(0.1)
P 		383.8
(0.2)
P 		266
avr 417.7
(1.7) 		406.2
(1.3) 		276.8
(-3) 		290.4
(-2.6) 		458.5
(3) 		373.4
(0.2) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25110
Sequence Type Exemplar sequence
Representative Public ID C70047 NCBI
Target Description C70047 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K07C5.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70047 /WB_GENE_ID=K07C5.1 /WP=CE06111 /CHR=5 /FEA=Genomic Cluster /DEF=actin; C.elegans cDNA clone yk377e3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073256 NCBI Caenorhabditis elegans K07C5.1 (actin) mRNA, complete cds. 11/11 None
K07C5.1 ENSEMBL cdna:known chromosome:CEL140:V:10338047:10340937:-1 gene:K07C5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10338109-10340933(-) 100.0 100.0
Public Domain and Genome References
Gene Title actin
Gene Symbol arx-2
Ensembl K07C5.1
Entrez Gene 179440 Entrez gene
SwissProt P53489 EMBL-EBI
WormBase CE06111 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20311_AT actin-related protein 2 (ARP2) at
ATH1-121501:257787_AT actin-related protein 2 (ARP2) at
CANINE:1604224_AT similar to actin-related protein 2 isoform a cfa
CANINE_2:CFA.20888.1.S1_S_AT similar to actin-related protein 2 isoform a cfa
CANINE_2:CFA.3302.2.S1_AT similar to actin-related protein 2 isoform a cfa
CANINE_2:CFAAFFX.5751.1.S1_AT similar to actin-related protein 2 isoform a cfa
DROSOPHILA_2:1631049_AT Actin-related protein 14D dm
DROSGENOME1:143685_AT Actin-related protein 14D dm
CHICKEN:GGA.3020.1.S1_AT ARP2 actin-related protein 2 homolog (yeast) gga
HG-U133_PLUS_2:200727_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133A_2:200727_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133A:200727_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133_PLUS_2:200728_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133A_2:200728_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-FOCUS:200728_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133A:200728_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133A:200729_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133_PLUS_2:200729_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133A_2:200729_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HU35KSUBA:C16379_AT ARP2 actin-related protein 2 homolog (yeast) hs
HU35KSUBA:AF006082_AT ARP2 actin-related protein 2 homolog (yeast) hs
U133_X3P:G5031570_3P_A_AT ARP2 actin-related protein 2 homolog (yeast) hs
U133_X3P:HS2.393201.2.S1_3P_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
U133_X3P:HS2.12755.1.S1_3P_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
U133_X3P:HS.42915.0.A3_3P_AT ARP2 actin-related protein 2 homolog (yeast) hs
U133_X3P:HS.42915.0.A1_3P_A_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133_PLUS_2:1554390_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133_PLUS_2:1558015_S_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U95AV2:35733_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U95AV2:35734_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133_PLUS_2:234210_X_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133B:234210_X_AT ARP2 actin-related protein 2 homolog (yeast) hs
U133_X3P:HS.306753.0.S1_3P_X_AT ARP2 actin-related protein 2 homolog (yeast) hs
U133_X3P:234210_3P_X_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133_PLUS_2:234212_AT ARP2 actin-related protein 2 homolog (yeast) hs
HG-U133B:234212_AT ARP2 actin-related protein 2 homolog (yeast) hs
MU11KSUBA:AA119603_AT ARP2 actin-related protein 2 homolog (yeast) mm
MU11KSUBB:MSA.40979.0_AT ARP2 actin-related protein 2 homolog (yeast) mm
MG-U74AV2:96896_AT ARP2 actin-related protein 2 homolog (yeast) mm
MG-U74AV2:104168_AT ARP2 actin-related protein 2 homolog (yeast) mm
MOE430A:1452587_AT ARP2 actin-related protein 2 homolog (yeast) mm
MOUSE430A_2:1452587_AT ARP2 actin-related protein 2 homolog (yeast) mm
MOUSE430_2:1452587_AT ARP2 actin-related protein 2 homolog (yeast) mm
MOE430B:1441660_AT ARP2 actin-related protein 2 homolog (yeast) mm
MOUSE430_2:1441660_AT ARP2 actin-related protein 2 homolog (yeast) mm
MU19KSUBA:TC19067_F_AT ARP2 actin-related protein 2 homolog (yeast) (Actr2), mRNA mm
MU19KSUBB:TC30774_AT ARP2 actin-related protein 2 homolog (yeast) (Actr2), mRNA mm
MU19KSUBC:TC39529_AT ARP2 actin-related protein 2 homolog (yeast) (Actr2), mRNA mm
MU19KSUBC:TC39529_G_AT ARP2 actin-related protein 2 homolog (yeast) (Actr2), mRNA mm
RG-U34C:RC_AI237065_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RG-U34C:AA801058_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAE230A:1375424_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAT230_2:1375424_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAE230B:1379687_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAT230_2:1379687_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAE230B:1398626_S_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAT230_2:1398626_S_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAE230B:1384333_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RAT230_2:1384333_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RG-U34C:RC_AI229337_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
RG-U34A:RC_AI639218_AT ARP2 actin-related protein 2 homolog (yeast) (predicted) rn
YEAST_2:1769387_AT Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5884 actin filament inferred from electronic annotation QuickGO AmiGO
15629 actin cytoskeleton inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5200 structural constituent of cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94894 Hypothetical protein K07C5.1 [Caenorhabditis elegans] ref|NP_505657.1| K07C5.1 [Caenorhabditis elegans] sp|P53489|ARP2_CAEEL Actin-like protein 2 (Actin-related protein 2) (Actin-like protein C) 0.0
blast Q61JZ2 Actin-like protein 2 (Actin-related protein 2) emb|CAE64793.1| Hypothetical protein CBG09586 [Caenorhabditis briggsae] 0.0
blast AAH44105 Actr2-prov protein [Xenopus laevis] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR004000 EMBL-EBI Actin/actin-like 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173624_AT
gtgactttattttcgtgttaacatgtttaaaagtgctttatgttcatttatccccgtttc
tctgaattctcttaaaatcccctacctgttaactaatttattctttataggcatcctatt
ctcccccactctcattcaaacgtttatctttcaaaccaacaaccacctgaatccatcatt
ctctgttgtaaatacattttccactttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACTTTATTTTCGTGTTAACATG 126 483 1207 Antisense
GTGCTTTATGTTCATTTATCCCCGT 579 479 1239 Antisense
CCGTTTCTCTGAATTCTCTTAAAAT 231 265 1260 Antisense
TGAATTCTCTTAAAATCCCCTACCT 629 573 1269 Antisense
TCTTTATAGGCATCCTATTCTCCCC 315 613 1308 Antisense
CCCCACTCTCATTCAAACGTTTATC 372 261 1330 Antisense
CTCTCATTCAAACGTTTATCTTTCA 53 229 1335 Antisense
TTATCTTTCAAACCAACAACCACCT 324 679 1350 Antisense
AACAACCACCTGAATCCATCATTCT 425 135 1364 Antisense
GAATCCATCATTCTCTGTTGTAAAT 23 331 1375 Antisense
GTTGTAAATACATTTTCCACTTTGA 106 423 1391 Antisense
Sequence Source Affymetrix Proprietary Database