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[173623_s_at]

Description CEK046H9R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W10D5.3A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34508 /WB_GENE_ID=W10D5.3A /WP=CE14782 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46h9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 31      6grp_total > 24      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 992
1 2 3 4 range
A 1442.4
(2.7)
P 		582.2
(-3)
P 		591.3
(-2.9)
P 		1492.5
(3)
P 		910
B 1527.3
(3)
P 		547.3
(-3)
P 		539.6
(-3)
P 		1049.2
(0.1)
P 		988
C 1426.2
(3)
P 		535.3
(-3)
P 		685.9
(-2)
P 		909.4
(-0.5)
P 		891
avr 1465.3
(3) 		554.9
(-3) 		605.6
(-2.7) 		1150.4
(0.9) 		910

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1013
1 2 3 4 5 6 range
A 899.7
(-0.1)
P 		1153.2
(3)
P 		922
(0.1)
P 		667.3
(-3)
P 		757.1
(-1.9)
P 		728.5
(-2.2)
P 		486
B 1511.9
(3)
P 		1374.3
(2.1)
P 		1060.9
(0.2)
P 		986.5
(-0.3)
P 		547.8
(-3)
P 		780.8
(-1.5)
P 		964
C 952.3
(1.1)
P 		1161.9
(3)
P 		979.7
(1.4)
P 		978.6
(1.3)
P 		498.8
(-3)
P 		675.6
(-1.4)
P 		663
avr 1121.3
(2) 		1229.8
(3) 		987.5
(0.7) 		877.5
(-0.4) 		601.2
(-3) 		728.3
(-1.8) 		629
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 525.2
(3)
P 		126.4
(-3)
P 		154.6
(-2.6)
P 		218.5
(-1.6)
P 		399
B 487.1
(3)
P 		135.2
(-2.8)
P 		125
(-3)
P 		223.6
(-1.4)
P 		362
C 472.1
(3)
P 		153.9
(-3)
P 		239.1
(-1.4)
P 		153.3
(-3)
P 		319
avr 494.8
(3) 		138.5
(-3) 		172.9
(-2.4) 		198.5
(-2) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 165.8
(-3)
P 		410.1
(3)
P 		200.8
(-2.1)
P 		169.2
(-2.9)
P 		228.5
(-1.5)
P 		177.4
(-2.7)
P 		244
B 526.1
(3)
P 		457.5
(1.6)
P 		257.6
(-2.3)
P 		261.3
(-2.2)
P 		222.6
(-3)
P 		291.2
(-1.6)
P 		304
C 353
(3)
P 		354.5
(3)
P 		249.4
(-0.3)
P 		196.8
(-1.9)
P 		161.4
(-3)
P 		226.2
(-1)
P 		193
avr 348.3
(1.3) 		407.4
(3) 		235.9
(-2.1) 		209.1
(-2.9) 		204.2
(-3) 		231.6
(-2.2) 		203
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173623_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22986
Sequence Type Exemplar sequence
Representative Public ID CEK046H9R NCBI
Target Description CEK046H9R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W10D5.3A /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34508 /WB_GENE_ID=W10D5.3A /WP=CE14782 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026507(11), NM_060043(11), NM_001026506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026507 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NM_060043 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NM_001026506 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
W10D5.3f ENSEMBL cdna:known chromosome:CEL140:I:9108977:9116063:-1 gene:W10D5.3 11/11 A 
W10D5.3e ENSEMBL cdna:known chromosome:CEL140:I:9108978:9115663:-1 gene:W10D5.3 11/11 A 
W10D5.3c ENSEMBL cdna:known chromosome:CEL140:I:9108978:9115663:-1 gene:W10D5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172733 6 3 NM_001026506 173623_s_at (11)
NM_001026507 173623_s_at (11), 188222_s_at (11)
NM_001026508 188222_s_at (11)
NM_060043 173623_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9108920-9115595(-) 98.32 100.0
Public Domain and Genome References
Ensembl W10D5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD98730 Hypothetical protein W10D5.3f [Caenorhabditis elegans] ref|NP_001021678.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB02134 Hypothetical protein W10D5.3a [Caenorhabditis elegans] ref|NP_492442.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB54321 Hypothetical protein W10D5.3d [Caenorhabditis elegans] ref|NP_492443.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB02133 Hypothetical protein W10D5.3c [Caenorhabditis elegans] ref|NP_492444.2| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAI79179 Hypothetical protein W10D5.3g [Caenorhabditis elegans] ref|NP_001021679.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAD98729 Hypothetical protein W10D5.3e [Caenorhabditis elegans] ref|NP_001021677.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Sequence
Target Sequence 
>C. ELEGANS:173623_S_AT
tatcgtcagaattgattgatttccaatcatactgcttaatctcattcttttgtttttttt
ttgagttaatttggctttaatttaatgttcggaacttcaaccgacccaatcaaatatctc
acatttctctccgtgatttttgttcaatatgttttaattttcaaatcgagcccccaaatc
gtgtttctagttttccatccatttcatccgatgtttttccacagccgtgaaaatgcacaa
gtggcctagaaattgtaagaatctaggccatgcggctttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGTCAGAATTGATTGATTTCCA 654 657 2069 Antisense
GATTGATTTCCAATCATACTGCTTA 2 435 2082 Antisense
CATACTGCTTAATCTCATTCTTTTG 497 213 2096 Antisense
GCTTAATCTCATTCTTTTGTTTTTT 548 303 2102 Antisense
TGGCTTTAATTTAATGTTCGGAACT 143 543 2140 Antisense
TGTTCGGAACTTCAACCGACCCAAT 99 553 2154 Antisense
AACCGACCCAATCAAATATCTCACA 635 145 2167 Antisense
ATATCTCACATTTCTCTCCGTGATT 287 21 2182 Antisense
CGATGTTTTTCCACAGCCGTGAAAA 434 247 2277 Antisense
TCCACAGCCGTGAAAATGCACAAGT 424 587 2286 Antisense
AGAATCTAGGCCATGCGGCTTTCCT 687 71 2326 Antisense
Sequence Source Affymetrix Proprietary Database