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[173622_s_at]

Description CEK027D2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F10G7.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33183 /WB_GENE_ID=F10G7.10 /WP=CE27946 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 61      6grp_total > 27      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 546
1 2 3 4 range
A 597.5
(1.1)
P 		363.6
(-1.4)
P 		220.3
(-3)
P 		765.9
(3)
P 		546
B 626.7
(1.4)
P 		333.6
(-2.5)
P 		297.2
(-3)
P 		744.2
(3)
P 		447
C 626.9
(3)
P 		360.2
(-2.5)
P 		336.8
(-3)
P 		596.3
(2.4)
P 		290
avr 617
(1.8) 		352.5
(-2) 		284.8
(-3) 		702.1
(3) 		417

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 691.2
(3)
P 		516.6
(0.5)
P 		347.2
(-1.9)
P 		273.3
(-3)
P 		406.5
(-1.1)
P 		509
(0.4)
P 		418
B 503.3
(3)
P 		498.2
(2.8)
P 		485.2
(2.3)
P 		337.8
(-3)
P 		371.8
(-1.8)
P 		390.3
(-1.1)
P 		166
C 424.9
(0.4)
P 		436.3
(0.8)
P 		454.3
(1.5)
P 		361.5
(-2.1)
P 		339.9
(-3)
P 		491.9
(3)
P 		152
avr 539.8
(3) 		483.7
(1.4) 		428.9
(-0.1) 		324.2
(-3) 		372.7
(-1.7) 		463.7
(0.9) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 217.5
(3)
P 		78.9
(-2.2)
P 		57.6
(-3)
P 		112.1
(-1)
P 		160
B 199.9
(3)
P 		82.4
(-2.4)
P 		68.9
(-3)
P 		158.6
(1.1)
P 		131
C 207.5
(3)
P 		103.6
(-2.8)
P 		117.4
(-2.1)
P 		100.5
(-3)
P 		107
avr 208.3
(3) 		88.3
(-2.7) 		81.3
(-3) 		123.7
(-1) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 127.4
(0)
P 		183.7
(3)
P 		75.6
(-2.7)
P 		69.3
(-3)
P 		122.6
(-0.2)
P 		123.9
(-0.1)
P 		114
B 175.1
(3)
P 		165.8
(2.3)
P 		117.8
(-1)
P 		89.5
(-3)
P 		151
(1.3)
P 		145.6
(0.9)
P 		86
C 157.5
(2.5)
P 		133.1
(0.9)
P 		115.6
(-0.2)
P 		72.7
(-3)
P 		110
(-0.6)
P 		164.7
(3)
P 		92
avr 153.3
(2.5) 		160.9
(3) 		103
(-1.2) 		77.2
(-3) 		127.9
(0.6) 		144.7
(1.8) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173622_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23727
Sequence Type Exemplar sequence
Representative Public ID CEK027D2R NCBI
Target Description CEK027D2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F10G7.10 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33183 /WB_GENE_ID=F10G7.10 /WP=CE27946 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062440 NCBI Caenorhabditis elegans F10G7.10a (F10G7.10) mRNA, complete cds. 11/11 None
F10G7.10a ENSEMBL cdna:known chromosome:CEL140:II:4713669:4726034:-1 gene:F10G7.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182130 7/11 Cross Hyb Matching Probes None
SNAP00000035613 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035629 2/11 Cross Hyb Matching Probes None
F10G7.10b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173813 3 1 NM_062440 173622_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4713681-4727849(-) 100.0 100.0
Public Domain and Genome References
Ensembl F10G7.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494841 F10G7.10a [Caenorhabditis elegans] gb|AAO38656.1| Hypothetical protein F10G7.10a [Caenorhabditis elegans] 0.0
blast D88131 protein F10G7.10 [imported] - Caenorhabditis elegans 0.0
blast NP_871931 F10G7.10c [Caenorhabditis elegans] gb|AAO38658.1| Hypothetical protein F10G7.10c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 8.1E-35
Sequence
Target Sequence 
>C. ELEGANS:173622_S_AT
gaaccattggcgtggaaacctcggcgaatcctcaagccaccaaccaatttcgatgagctt
tttggccgatatttccatagagaatgcaacaagtgctcatcggtcccatcttacccagtc
atgtgccttttctgtggagaaattctttgcctgaacgattgttgccgaatggcccatcaa
gagtcgggaagtgatcgggtgatcagtatgtcggagattgaggcgcatgccgaagactgt
tcctcatcgtcgggtctcttcctttccgtgacgtcatcaatggttgtagtgtcacgtggc
aaacaggcggccatatggggtacgatctacctggatgctcacaaggaagaggatcggaat
ctgaaacgtggaaagccgttattcctgtgcgaatcgcggctcaaatggctcgagtacgat
tgggctgagcaggaatggcagcgggttccacaatggttcaatatgacgaattcacaagca
tttaccagtaatattcgggattgtcacttgtttcaacgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCATTGGCGTGGAAACCTCGGC 145 1 5999 Antisense
CTCAAGCCACCAACCAATTTCGATG 507 227 6029 Antisense
GATTGTTGCCGAATGGCCCATCAAG 7 435 6155 Antisense
TGAGGCGCATGCCGAAGACTGTTCC 466 567 6217 Antisense
TAGTGTCACGTGGCAAACAGGCGGC 202 651 6285 Antisense
ACAGGCGGCCATATGGGGTACGATC 314 1 6301 Antisense
GGGTACGATCTACCTGGATGCTCAC 307 495 6316 Antisense
GAAAGCCGTTATTCCTGTGCGAATC 216 359 6369 Antisense
GAATCGCGGCTCAAATGGCTCGAGT 419 329 6389 Antisense
TGGCAGCGGGTTCCACAATGGTTCA 484 545 6434 Antisense
GGGATTGTCACTTGTTTCAACGCTA 348 497 6495 Antisense
Sequence Source Affymetrix Proprietary Database