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[173621_s_at]

Description C59502_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y43F8C.16 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C59502 /WB_GENE_ID=Y43F8C.16 /WP=CE21914 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437c11 : 3prime end, single read.
Cluster 6grp_total > 17      4grp_total > 17      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.3
(-3)
A 		4.6
(-0.4)
A 		7.6
(3)
A 		5.9
(1.1)
A 		5
B 1.9
(-3)
A 		5.7
(3)
A 		3.6
(-0.3)
A 		5.4
(2.5)
A 		4
C 2.7
(-2.9)
A 		5.5
(-2)
A 		2.3
(-3)
A 		21.8
(3)
A 		20
avr 2.3
(-3) 		5.3
(-0.9) 		4.5
(-1.5) 		11
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 11.5
(3)
A 		2.1
(-2.9)
A 		3.3
(-2.1)
A 		1.9
(-3)
A 		2.8
(-2.4)
A 		5.2
(-0.9)
A 		10
B 2.6
(-2)
A 		2.4
(-2.4)
A 		3.7
(0.2)
A 		2.1
(-3)
A 		2.3
(-2.6)
A 		5.1
(3)
A 		3
C 2.6
(0.9)
A 		1.9
(-1.2)
A 		3.2
(2.7)
A 		3.3
(3)
A 		2.3
(-0)
A 		1.3
(-3)
A 		2
avr 5.6
(3) 		2.1
(-3) 		3.4
(-0.8) 		2.4
(-2.5) 		2.5
(-2.3) 		3.9
(0.1) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.8
(-3)
A 		1
(-2)
A 		2
(3)
A 		0.9
(-2.5)
A 		1
B 0.6
(-3)
A 		1.4
(3)
A 		0.8
(-1.5)
A 		1.1
(0.8)
A 		1
C 0.9
(-2.8)
A 		1.6
(-1.3)
A 		0.8
(-3)
A 		3.7
(3)
A 		3
avr 0.8
(-3) 		1.3
(-0.3) 		1.2
(-0.8) 		1.9
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2.1
(3)
A 		0.7
(-2.3)
A 		0.7
(-2.3)
A 		0.5
(-3)
A 		0.9
(-1.5)
A 		1.3
(0)
A 		2
B 0.9
(-1.6)
A 		0.8
(-2.1)
A 		0.9
(-1.6)
A 		0.6
(-3)
A 		0.9
(-1.6)
A 		1.9
(3)
A 		1
C 1
(3)
A 		0.6
(-1)
A 		0.8
(1)
A 		0.7
(-0)
A 		0.7
(-0)
A 		0.4
(-3)
A 		1
avr 1.3
(3) 		0.7
(-2.1) 		0.8
(-1.3) 		0.6
(-3) 		0.8
(-1.3) 		1.2
(2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173621_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25587
Sequence Type Exemplar sequence
Representative Public ID C59502 NCBI
Target Description C59502_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y43F8C.16 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C59502 /WB_GENE_ID=Y43F8C.16 /WP=CE21914 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk437c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075415 NCBI Caenorhabditis elegans Y43F8C.16 (Y43F8C.16) mRNA, complete cds. 11/11 None
SNAP00000039622 ENSEMBL cdna:SNAP chromosome:CEL140:V:19712220:19713358:-1 11/11 None
GENEFINDER00000039624 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19712296:19713517:-1 11/11 None
Y43F8C.16 ENSEMBL cdna:known chromosome:CEL140:V:19712211:19713517:-1 gene:Y43F8C.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19712221-19713518(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8C.16
Entrez Gene 180295 Entrez gene
SwissProt Q9XWN5 EMBL-EBI
WormBase CE34118 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21616 Hypothetical protein Y43F8C.16 [Caenorhabditis elegans] ref|NP_507816.2| Y43F8C.16 [Caenorhabditis elegans] 1.0E-81
blast CAA21616 Hypothetical protein Y43F8C.16 [Caenorhabditis elegans] ref|NP_507816.2| Y43F8C.16 [Caenorhabditis elegans] 4.0E-69
blast CAA21616 Hypothetical protein Y43F8C.16 [Caenorhabditis elegans] ref|NP_507816.2| Y43F8C.16 [Caenorhabditis elegans] 5.0E-59
Sequence
Target Sequence 
>C. ELEGANS:173621_S_AT
acaagtacgataacgccgaccacatcggcagatccaacaagcacaataactacaagtaca
actccgaatccatcttccccaagtacagtgcaatccacgacgactgcagaacctacaagt
acaataacttccaccactgttccggagtcatctaccacaagtgtagtacaatccacgacg
actgcagaacctacaagtacaataacttccaccactgttccggagtcatcaacttctttg
cttacatcgaccttggcttctactacaactttaatccctacatcaacgatgagtacaatt
accttgacatcagatcgcacaagtacaataacatccactggatcttcaaaccctccatca
acaagcacagtaccatccacaacaacttccactacaactccgaagccgtcttccccaagt
acagcggaagccagtacaactcccgtactcacatcgaacttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGTACGATAACGCCGACCACAT 3 113 396 Antisense
CAAGTACAACTCCGAATCCATCTTC 46 183 448 Antisense
TCTTCCCCAAGTACAGTGCAATCCA 139 617 468 Antisense
CAATCCACGACGACTGCAGAACCTA 126 183 486 Antisense
AGTACAATAACTTCCACCACTGTTC 559 61 513 Antisense
ACAATCCACGACGACTGCAGAACCT 679 111 563 Antisense
TGTTCCGGAGTCATCAACTTCTTTG 672 561 611 Antisense
TCAACTTCTTTGCTTACATCGACCT 189 631 624 Antisense
GGCTTCTACTACAACTTTAATCCCT 279 537 650 Antisense
TCAACAAGCACAGTACCATCCACAA 83 631 753 Antisense
TCCCGTACTCACATCGAACTTGACT 280 595 836 Antisense
Sequence Source Affymetrix Proprietary Database