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[173620_s_at]

Description CEK112A7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C03A7.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D72970 /WB_GENE_ID=C03A7.11 /WP=CE07869 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_high_8_8 > 14      6grp_highest_nonorm > 95      6grp_total > 77      4grp_total > 09      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1338
1 2 3 4 range
A 64
(-3)
A 		300.3
(-1.8)
P 		384.5
(-1.4)
P 		1253.8
(3)
P 		1190
B 111.1
(-3)
P 		297.5
(-2.1)
P 		275
(-2.2)
P 		1394.2
(3)
P 		1283
C 72.5
(-3)
P 		268.9
(-2.1)
P 		426.8
(-1.4)
P 		1401.9
(3)
P 		1329
avr 82.5
(-3) 		288.9
(-2) 		362.1
(-1.7) 		1350
(3) 		1268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1944
1 2 3 4 5 6 range
A 193.5
(-3)
P 		241.8
(-2.8)
P 		539.7
(-1.7)
P 		638
(-1.3)
P 		607.8
(-1.4)
P 		1764.8
(3)
P 		1571
B 283.8
(-2.8)
P 		226.8
(-3)
P 		427.3
(-2.4)
P 		463.6
(-2.3)
P 		685.3
(-1.6)
P 		2137.9
(3)
P 		1911
C 266.6
(-3)
P 		315.2
(-2.8)
P 		395.4
(-2.5)
P 		610.7
(-1.8)
P 		496.9
(-2.2)
P 		1937.1
(3)
P 		1671
avr 248
(-3) 		261.3
(-3) 		454.1
(-2.3) 		570.8
(-1.9) 		596.7
(-1.8) 		1946.6
(3) 		1699
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 23.3
(-3)
A 		65.2
(-1.4)
P 		100.5
(-0.1)
P 		183.5
(3)
P 		160
B 35.4
(-3)
P 		73.5
(-2.1)
P 		63.7
(-2.4)
P 		297.1
(3)
P 		262
C 24
(-3)
P 		77.3
(-1.5)
P 		148.8
(0.5)
P 		236.4
(3)
P 		212
avr 27.6
(-3) 		72
(-1.7) 		104.3
(-0.8) 		239
(3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 762
1 2 3 4 5 6 range
A 35.7
(-3)
P 		86
(-2.2)
P 		117.5
(-1.8)
P 		161.8
(-1.1)
P 		183.4
(-0.8)
P 		429.7
(3)
P 		394
B 98.8
(-2.8)
P 		75.5
(-3)
P 		103.8
(-2.8)
P 		122.8
(-2.6)
P 		278.4
(-1.3)
P 		797.2
(3)
P 		722
C 98.8
(-3)
P 		96.2
(-3)
P 		100.6
(-3)
P 		122.8
(-2.7)
P 		160.8
(-2.3)
P 		648.4
(3)
P 		552
avr 77.8
(-3) 		85.9
(-2.9) 		107.3
(-2.7) 		135.8
(-2.4) 		207.5
(-1.6) 		625.1
(3) 		547
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173620_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25701
Sequence Type Exemplar sequence
Representative Public ID CEK112A7R NCBI
Target Description CEK112A7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C03A7.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D72970 /WB_GENE_ID=C03A7.11 /WP=CE07869 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk112a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071987 NCBI Caenorhabditis elegans C03A7.11 (C03A7.11) mRNA, complete cds. 11/11 None
SNAP00000035283 ENSEMBL cdna:SNAP chromosome:CEL140:V:5174920:5177068:-1 11/11 None
GENEFINDER00000035303 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5170848:5181268:-1 9/11 None
C03A7.11 ENSEMBL cdna:known chromosome:CEL140:V:5174849:5177068:-1 gene:C03A7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5174859-5177069(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ugt-51
Ensembl C03A7.11
Entrez Gene 178905 Entrez gene
SwissProt O16506 EMBL-EBI
WormBase CE32564 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637192_AT dm
DROSGENOME1:150452_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66005 Udp-glucuronosyltransferase protein 51 [Caenorhabditis elegans] ref|NP_504388.2| C03A7.11 [Caenorhabditis elegans] 0.0
blast CAE64089 Hypothetical protein CBG08694 [Caenorhabditis briggsae] 0.0
blast CAE56262 Hypothetical protein CBG23906 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.9E-26
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.8E-36
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-14
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.9E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504388.2 2 7-29,484-506
C03A7.11 2 7-29,484-506
SNAP00000035283 2 7-29,484-506
GENEFINDER00000035303 6 222-244,738-760,773-792,802-824,854-876,891-913
Sequence
Target Sequence 
>C. ELEGANS:173620_S_AT
gagaagctgttcgaggatgcggaaaatgttattctgttggattggctgccgcagacagat
ctgcttgacgatccacgtgtaattggatttatttcccatgttggtttgaactcattcaat
gaggcatcatatgctggaaaacctatcatcgcgattcctctatttgccgatcaacctcat
aacgcaagaaatggtgtcgctcgaggaacaacctatttattgaataaatcgaaactgtca
gaagaaagcattgaaaatggactacgagcaattttattcgacaaatcttacaccgaaagc
gcaagaaaacttcagaagatgttagttgagaagcctacaaaaccaaaggatcgatttgtt
gaatggatggaatacgcagcagtaaatccaggacttcataaaatattcgcacttcccgga
gctaaaatggggaatatcgagtattattgtgtggatactattgtttttatagcgttttca
tgtgtaacttttacttatatattttttaaaatggcgaaattttctttgtcttttatccgc
ctggtaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGCTGTTCGAGGATGCGGAAA 19 393 1016 Antisense
GATTGGCTGCCGCAGACAGATCTGC 205 435 1055 Antisense
TATTTCCCATGTTGGTTTGAACTCA 424 661 1105 Antisense
GGAAAACCTATCATCGCGATTCCTC 591 527 1151 Antisense
TATTTGCCGATCAACCTCATAACGC 36 663 1176 Antisense
AACGCAAGAAATGGTGTCGCTCGAG 204 145 1196 Antisense
GGTGTCGCTCGAGGAACAACCTATT 199 499 1208 Antisense
TACGCAGCAGTAAATCCAGGACTTC 95 649 1388 Antisense
ATATTCGCACTTCCCGGAGCTAAAA 23 19 1418 Antisense
TGGCGAAATTTTCTTTGTCTTTTAT 273 477 1527 Antisense
TTTGTCTTTTATCCGCCTGGTAAAG 312 667 1540 Antisense
Sequence Source Affymetrix Proprietary Database