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[173619_s_at]

Description CEK127G6R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R10D12.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D64927 /WB_GENE_ID=R10D12.8 /WP=CE12686 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk127g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 81      6grp_total > 30      4grp_total > 29      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 270.3
(1.5)
P 		234.8
(-0.2)
P 		173.9
(-3)
P 		303.2
(3)
P 		129
B 286.4
(3)
P 		251.1
(0.9)
P 		187.5
(-3)
P 		269.5
(2)
P 		99
C 377.8
(3)
P 		218.2
(-1.7)
P 		174.1
(-3)
P 		326.3
(1.5)
P 		204
avr 311.5
(3) 		234.7
(-0.5) 		178.5
(-3) 		299.7
(2.5) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 212.5
(-1.2)
P 		299.5
(2.1)
P 		323.3
(3)
P 		321.1
(2.9)
P 		222.4
(-0.9)
P 		166.8
(-3)
P 		157
B 235.8
(-1.7)
P 		319.3
(1.2)
P 		370.3
(3)
P 		272.4
(-0.4)
P 		212.4
(-2.6)
P 		199.7
(-3)
P 		171
C 235.8
(-0.2)
P 		292.7
(2.4)
P 		238.6
(-0.1)
P 		305.9
(3)
P 		175.6
(-3)
P 		205.5
(-1.6)
P 		130
avr 228
(-1.1) 		303.8
(2.7) 		310.7
(3) 		299.8
(2.5) 		203.5
(-2.4) 		190.7
(-3) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 98.4
(3)
P 		51
(-2.3)
P 		45.5
(-2.9)
P 		44.4
(-3)
P 		54
B 91.3
(3)
P 		62
(-0.7)
P 		43.4
(-3)
P 		57.4
(-1.2)
P 		48
C 125.1
(3)
P 		62.7
(-2.3)
P 		60.7
(-2.5)
P 		55
(-3)
P 		70
avr 104.9
(3) 		58.6
(-2.1) 		49.9
(-3) 		52.3
(-2.7) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 39.2
(-3)
P 		106.5
(3)
P 		70.4
(-0.2)
P 		81.4
(0.8)
P 		67.1
(-0.5)
P 		40.6
(-2.9)
P 		67
B 82
(-1.3)
P 		106.3
(3)
P 		89.9
(0.1)
P 		72.1
(-3)
P 		86.3
(-0.5)
P 		74.5
(-2.6)
P 		34
C 87.4
(2.6)
P 		89.3
(3)
P 		60.7
(-2.3)
P 		61.5
(-2.1)
P 		56.8
(-3)
P 		68.8
(-0.8)
P 		33
avr 69.5
(-1.8) 		100.7
(3) 		73.7
(-1.1) 		71.7
(-1.4) 		70.1
(-1.7) 		61.3
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173619_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25519
Sequence Type Exemplar sequence
Representative Public ID CEK127G6R NCBI
Target Description CEK127G6R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R10D12.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D64927 /WB_GENE_ID=R10D12.8 /WP=CE12686 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk127g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074062 NCBI Caenorhabditis elegans R10D12.8 (R10D12.8) mRNA, complete cds. 11/11 None
SNAP00000021053 ENSEMBL cdna:SNAP chromosome:CEL140:V:13953361:13954278:-1 11/11 None
GENEFINDER00000021065 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13953361:13955907:-1 11/11 None
R10D12.8 ENSEMBL cdna:known chromosome:CEL140:V:13953324:13955809:-1 gene:R10D12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13953361-13955783(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10D12.8
Entrez Gene 259659 Entrez gene
SwissProt P92010 EMBL-EBI
WormBase CE12686 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03251 Hypothetical protein R10D12.8 [Caenorhabditis elegans] ref|NP_506463.1| R10D12.8 [Caenorhabditis elegans] 0.0
blast CAB03251 Hypothetical protein R10D12.8 [Caenorhabditis elegans] ref|NP_506463.1| R10D12.8 [Caenorhabditis elegans] 1.0E-136
blast CAE66184 Hypothetical protein CBG11422 [Caenorhabditis briggsae] 1.0E-103
blast CAE66184 Hypothetical protein CBG11422 [Caenorhabditis briggsae] 2.0E-41
blast CAE63036 Hypothetical protein CBG07303 [Caenorhabditis briggsae] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.4E-7
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.4E-7
Sequence
Target Sequence 
>C. ELEGANS:173619_S_AT
gaggattctcaaccaagttcaaaacacgatttgtattccactactctgcccggtggaagt
gttagaattcggtgaagaaattaatattgaagtaaaattaaaaacacgacaagttgatgg
aaactttaaaccagattgcccgtcttttgtggaaatgccaggaatgaacaacgtaatcct
taaatttgatgaaaattgtgctataagagtgaataaatagtttcttgctcactttgcccc
attctttgttgcattattcttcaatgaaaatttcgaggaacacaagcaaaatgaaatcag
aataatctcggctagcttcaatgaaatgctcagtttccttgatgtcctctatcacaaaac
caaattattcaatgtgtcggaatactatcatgtgctacggattgcagatgggtggatttg
tgatgaagtgattcgaattatcgaaaaagcagttgaaaatacattatgcagtagcgtcaa
caaagaaaagctgagaatgaaatttaatttggcaaattccaaacaaatgccattggctga
aagtacgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATTCTCAACCAAGTTCAAAAC 233 403 1150 Antisense
CACGATTTGTATTCCACTACTCTGC 624 199 1174 Antisense
ACTACTCTGCCCGGTGGAAGTGTTA 629 101 1189 Antisense
TTAAACCAGATTGCCCGTCTTTTGT 622 677 1275 Antisense
TGCCCGTCTTTTGTGGAAATGCCAG 654 583 1286 Antisense
GCCCCATTCTTTGTTGCATTATTCT 414 285 1385 Antisense
GAATAATCTCGGCTAGCTTCAATGA 552 327 1449 Antisense
AAATGCTCAGTTTCCTTGATGTCCT 273 119 1473 Antisense
GATGTCCTCTATCACAAAACCAAAT 667 405 1490 Antisense
GTCGGAATACTATCATGTGCTACGG 583 471 1525 Antisense
AATGCCATTGGCTGAAAGTACGCTG 455 165 1675 Antisense
Sequence Source Affymetrix Proprietary Database