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[173618_s_at]

Description CEK016AZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T12E12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27631 /WB_GENE_ID=T12E12.3 /WP=CE13587 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16a12 : 3prime end, single read.
Cluster 6grp_total > 48      4grp_total > 32      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 17.9
(3)
A 		17.4
(2.6)
A 		17.8
(2.9)
A 		10.4
(-3)
A 		8
B 9.1
(-3)
A 		24.6
(-1.8)
A 		83.6
(2.6)
A 		88.5
(3)
A 		79
C 47.2
(2.8)
A 		10.6
(-3)
A 		48.4
(3)
A 		28.2
(-0.2)
A 		38
avr 24.7
(-1.7) 		17.5
(-3) 		49.9
(3) 		42.4
(1.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 10.3
(-3)
A 		57.9
(3)
A 		11.3
(-2.9)
A 		28.8
(-0.7)
A 		10.9
(-2.9)
A 		55.6
(2.7)
A 		48
B 63.2
(2.9)
A 		63.7
(3)
A 		10.6
(-3)
A 		16.3
(-2.4)
A 		37
(-0)
A 		57.4
(2.3)
A 		53
C 64.6
(2.8)
A 		8.8
(-3)
A 		30.5
(-0.7)
A 		49.9
(1.3)
A 		32.6
(-0.5)
A 		66.2
(3)
A 		57
avr 46
(1.1) 		43.5
(0.7) 		17.5
(-3) 		31.7
(-1) 		26.8
(-1.7) 		59.7
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.5
(3)
A 		3.8
(-0.2)
A 		4.7
(0.8)
A 		1.5
(-3)
A 		5
B 2.9
(-3)
A 		6.1
(-1.8)
A 		19.4
(3)
A 		18.9
(2.8)
A 		17
C 15.6
(2.4)
A 		3
(-3)
A 		16.9
(3)
A 		4.8
(-2.2)
A 		14
avr 8.3
(-0.4) 		4.3
(-3) 		13.7
(3) 		8.4
(-0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.9
(-3)
A 		20.6
(3)
A 		2.5
(-2.8)
A 		7.3
(-1.3)
A 		3.3
(-2.6)
A 		13.5
(0.7)
A 		19
B 22
(3)
A 		21.2
(2.8)
A 		2.6
(-3)
A 		4.3
(-2.5)
A 		15
(0.8)
A 		21.4
(2.8)
A 		19
C 23.9
(3)
A 		2.7
(-3)
A 		7.8
(-1.6)
A 		10
(-0.9)
A 		10.5
(-0.8)
A 		22.2
(2.5)
A 		21
avr 15.9
(1.7) 		14.8
(1.3) 		4.3
(-3) 		7.2
(-1.8) 		9.6
(-0.8) 		19
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173618_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24922
Sequence Type Exemplar sequence
Representative Public ID CEK016AZR NCBI
Target Description CEK016AZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T12E12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27631 /WB_GENE_ID=T12E12.3 /WP=CE13587 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk16a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068426 NCBI Caenorhabditis elegans T12E12.3 (T12E12.3) mRNA, complete cds. 11/11 None
SNAP00000021914 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5541624:5544353:1 11/11 None
GENEFINDER00000021923 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5541624:5544353:1 11/11 None
T12E12.3 ENSEMBL cdna:known chromosome:CEL140:IV:5541620:5544720:1 gene:T12E12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5541630-5544360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12E12.3
Entrez Gene 177337 Entrez gene
SwissProt Q22429 EMBL-EBI
WormBase CE13587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03119 Hypothetical protein T12E12.3 [Caenorhabditis elegans] ref|NP_500827.1| T12E12.3 [Caenorhabditis elegans] 0.0
blast CAB05583 Hypothetical protein R06A4.2 [Caenorhabditis elegans] ref|NP_496986.1| R06A4.2 [Caenorhabditis elegans] 0.0
blast CAE65933 Hypothetical protein CBG11106 [Caenorhabditis briggsae] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:173618_S_AT
atgaacgctgatgtgatcttgccctctgaagccggtcaagggtctcgagacgttttcata
tcacaatacgactcaacgattccagagtcttgtagctttgatgagtccattcaaaattcg
tccagggtggaagaggaggagccatcttcccacgtcccatcatcgtcagcagctgagccc
gtgttgaagttacctctggtgccccagttatgtcgaacagttcccggtgctccagagcca
gccaaaattgttccaatttcggtggattgtgatgctctgaagttgcaagccgttcaacaa
gttttggacgatgcagacgatgaagatttagatttgatgggctcagcgctagagaaggct
tttggaaaccaggaaaattggactgacgagtccgcggcgaagaccgttacaagtgatgcc
attaccaacgcgattgaaaccaaattcacaggaatctctcgcgaagttcttctggaacag
aaggagcgtctcgtagaagaggctctcgacaacgtcgaaaacgagaaggttctcgaagtg
cgcacagaagccatccgaaaagcgctcatcgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACGCTGATGTGATCTTGCCCT 291 45 1866 Antisense
GAGTCTTGTAGCTTTGATGAGTCCA 429 397 1950 Antisense
GAGTCCATTCAAAATTCGTCCAGGG 76 399 1968 Antisense
CCCATCATCGTCAGCAGCTGAGCCC 636 257 2021 Antisense
AGCTGAGCCCGTGTTGAAGTTACCT 265 79 2036 Antisense
TTACCTCTGGTGCCCCAGTTATGTC 106 681 2055 Antisense
TTATGTCGAACAGTTCCCGGTGCTC 471 681 2073 Antisense
GATGCTCTGAAGTTGCAAGCCGTTC 622 413 2136 Antisense
AGTGATGCCATTACCAACGCGATTG 694 57 2277 Antisense
GCGTCTCGTAGAAGAGGCTCTCGAC 703 291 2351 Antisense
GCCATCCGAAAAGCGCTCATCGAGG 381 281 2415 Antisense
Sequence Source Affymetrix Proprietary Database