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[173617_at]

Description CEK012EXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F43B10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27527 /WB_GENE_ID=F43B10.2 /WP=CE19871 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk12e10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 42      6grp_total > 29      4grp_total > 53      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 125.2
(0.7)
P 		176.3
(3)
P 		126.9
(0.8)
P 		43.9
(-3)
A 		132
B 205.7
(3)
P 		107.9
(-2.2)
P 		93.2
(-3)
P 		120.5
(-1.5)
P 		113
C 157.8
(3)
P 		134.2
(1.1)
P 		151.5
(2.5)
P 		82.1
(-3)
P 		76
avr 162.9
(3) 		139.5
(1.3) 		123.9
(0.1) 		82.2
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 117.6
(1.3)
P 		123.2
(1.6)
P 		66.6
(-1.7)
P 		44.9
(-3)
A 		146.9
(3)
P 		96.7
(0)
P 		102
B 141.3
(2.2)
P 		129.5
(1.4)
P 		62.8
(-3)
P 		83.6
(-1.6)
P 		152.8
(3)
P 		101.3
(-0.4)
P 		90
C 198.4
(3)
P 		137.9
(0.2)
P 		70
(-3)
P 		92.2
(-2)
P 		170
(1.7)
P 		82.9
(-2.4)
P 		128
avr 152.4
(2.7) 		130.2
(1.2) 		66.5
(-3) 		73.6
(-2.5) 		156.6
(3) 		93.6
(-1.2) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 45.6
(3)
P 		38.3
(1.9)
P 		33.2
(1.1)
P 		6.4
(-3)
A 		39
B 65.6
(3)
P 		26.7
(-2.3)
P 		21.6
(-3)
P 		25.7
(-2.4)
P 		44
C 52.2
(2.9)
P 		38.6
(0.8)
P 		52.8
(3)
P 		13.8
(-3)
P 		39
avr 54.5
(3) 		34.5
(-0.1) 		35.9
(0.2) 		15.3
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 21.7
(-1.1)
P 		43.8
(2.9)
P 		14.5
(-2.4)
P 		11.4
(-3)
A 		44.3
(3)
P 		23.5
(-0.8)
P 		33
B 49.2
(1.3)
P 		43.1
(0.6)
P 		15.3
(-3)
P 		22.1
(-2.1)
P 		62.1
(3)
P 		37.8
(-0.1)
P 		47
C 73.5
(3)
P 		42.1
(-0.4)
P 		17.8
(-3)
P 		18.5
(-2.9)
P 		55
(1)
P 		27.7
(-1.9)
P 		56
avr 48.1
(2.1) 		43
(1.3) 		15.9
(-3) 		17.3
(-2.8) 		53.8
(3) 		29.7
(-0.8) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26126
Sequence Type Exemplar sequence
Representative Public ID CEK012EXR NCBI
Target Description CEK012EXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F43B10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27527 /WB_GENE_ID=F43B10.2 /WP=CE19871 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk12e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078291 NCBI Caenorhabditis elegans F43B10.2 (F43B10.2) mRNA, complete cds. 11/11 None
F43B10.2 ENSEMBL cdna:known chromosome:CEL140:X:16665029:16674645:-1 gene:F43B10.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034870 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16665039-16674646(-) 95.35 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-343
Ensembl F43B10.2
Entrez Gene 181722 Entrez gene
SwissProt Q9TZM9 EMBL-EBI
WormBase CE35536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67399 Temporarily assigned gene name protein 343 [Caenorhabditis elegans] ref|NP_510692.2| F43B10.2 [Caenorhabditis elegans] 0.0
blast CAE69950 Hypothetical protein CBG16339 [Caenorhabditis briggsae] 1.0E-179
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510692.2 1 973-995
F43B10.2 1 973-995
Sequence
Target Sequence 
>C. ELEGANS:173617_AT
gaagtttttgtgatcattatatgtccaatttgtagttctttgctaattctctgttgataa
catgataacaagtcatgcactacaaatacaaaaaaacttctgaatgtttaaactttaatc
catgcatcactaactgccatagacatttgacaatttctttcaatatattttcgatgaata
ttgtgatactttttgaatttttattctgttgcagaagattgtattctgtatttttatatt
taaaatttttattctgaatcactcatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTTTGTGATCATTATATGTC 440 337 3062 Antisense
ATATGTCCAATTTGTAGTTCTTTGC 578 21 3080 Antisense
AGTTCTTTGCTAATTCTCTGTTGAT 114 65 3095 Antisense
GATAACAAGTCATGCACTACAAATA 178 423 3125 Antisense
TTTAAACTTTAATCCATGCATCACT 79 669 3168 Antisense
AATCCATGCATCACTAACTGCCATA 518 167 3178 Antisense
AACTGCCATAGACATTTGACAATTT 474 139 3193 Antisense
GAATATTGTGATACTTTTTGAATTT 46 327 3237 Antisense
TTTGAATTTTTATTCTGTTGCAGAA 203 667 3253 Antisense
GATTGTATTCTGTATTTTTATATTT 460 435 3278 Antisense
ATTTTTATTCTGAATCACTCATGAT 240 15 3306 Antisense
Sequence Source Affymetrix Proprietary Database