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[173614_at]

Description CEK006B8R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C46H11.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27928 /WB_GENE_ID=C46H11.11 /WP=CE26360 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 15      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 61      6grp_cgc > 03      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 245.1
(3)
P 		161.5
(-0.1)
P 		215.4
(1.9)
P 		81.9
(-3)
P 		163
B 203.5
(3)
P 		185.8
(2.1)
P 		186.8
(2.1)
P 		90.1
(-3)
P 		113
C 253.7
(3)
P 		190.9
(0.1)
P 		247.6
(2.7)
P 		123.9
(-3)
P 		130
avr 234.1
(3) 		179.4
(0.6) 		216.6
(2.2) 		98.6
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 244.6
(-1.1)
P 		418.2
(3)
P 		183.8
(-2.6)
P 		192.5
(-2.4)
P 		207.4
(-2)
P 		167.2
(-3)
P 		251
B 322.4
(3)
P 		287.6
(1.5)
P 		241
(-0.4)
P 		208.9
(-1.8)
P 		227.4
(-1)
P 		179.7
(-3)
P 		143
C 458.9
(3)
P 		246.1
(-1.2)
P 		171.3
(-2.6)
P 		201.3
(-2)
P 		334.9
(0.6)
P 		152.5
(-3)
P 		306
avr 342
(3) 		317.3
(2.2) 		198.7
(-1.9) 		200.9
(-1.8) 		256.6
(0.1) 		166.5
(-3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 89.2
(3)
P 		35.1
(-1.2)
P 		56.3
(0.4)
P 		12
(-3)
P 		77
B 64.9
(3)
P 		45.9
(0.5)
P 		43.3
(0.2)
P 		19.2
(-3)
P 		46
C 84
(2.8)
P 		54.9
(0.1)
P 		86.3
(3)
P 		20.9
(-3)
P 		65
avr 79.4
(3) 		45.3
(-0.3) 		62
(1.3) 		17.4
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 45.1
(-2.7)
P 		148.7
(3)
P 		40
(-3)
P 		48.8
(-2.5)
P 		62.6
(-1.8)
P 		40.7
(-3)
P 		109
B 112.2
(3)
P 		95.7
(1.3)
P 		58.5
(-2.7)
P 		55.3
(-3)
P 		92.4
(0.9)
P 		67
(-1.8)
P 		57
C 170.1
(3)
P 		75.1
(-1.4)
P 		43.6
(-2.9)
P 		40.5
(-3)
P 		108.4
(0.1)
P 		51.1
(-2.5)
P 		130
avr 109.1
(3) 		106.5
(2.7) 		47.4
(-3) 		48.2
(-2.9) 		87.8
(0.9) 		52.9
(-2.5) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173614_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22832
Sequence Type Exemplar sequence
Representative Public ID CEK006B8R NCBI
Target Description CEK006B8R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C46H11.11 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27928 /WB_GENE_ID=C46H11.11 /WP=CE26360 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170852 NCBI Caenorhabditis elegans Formin HOmology Domain family member (fhod-1) (fhod-1) mRNA, complete cds. 11/11 None
C46H11.11b ENSEMBL cdna:known chromosome:CEL140:I:5058282:5068832:-1 gene:C46H11.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172133 2 1 NM_170852 173614_at (11), 176006_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5058286-5061922(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46H11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16322 Hypothetical protein C46H11.11b [Caenorhabditis elegans] ref|NP_740839.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 0.0
blast CAE65723 Hypothetical protein CBG10805 [Caenorhabditis briggsae] 0.0
blast AAF99890 Hypothetical protein C46H11.11a [Caenorhabditis elegans] ref|NP_740840.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003104 EMBL-EBI Actin-binding FH2 2.0E-101
Sequence
Target Sequence 
>C. ELEGANS:173614_AT
tactagatttagtttcttttcgccaactccatattttcccctcaagtttctattttattt
ctccttcctcctcactcactccctacaattttccggtttcacaattcatatttcctgtat
tttttttggtttttttttcacctccccagttgccacaatcctcttccttcttattattct
tcaaccccacaaatcgacattttcaatgaccggtacatgcctctcctcgttttttttctg
ttttttgaaacaattttctctggattcacaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTAGATTTAGTTTCTTTTCGCCA 624 645 2393 Antisense
TAGATTTAGTTTCTTTTCGCCAACT 349 515 2396 Antisense
ACAATTTTCCGGTTTCACAATTCAT 384 115 2477 Antisense
CCGGTTTCACAATTCATATTTCCTG 522 265 2485 Antisense
ACAATTCATATTTCCTGTATTTTTT 271 115 2493 Antisense
TCTTCCTTCTTATTATTCTTCAACC 118 619 2554 Antisense
TTCAACCCCACAAATCGACATTTTC 28 683 2572 Antisense
ACATTTTCAATGACCGGTACATGCC 262 105 2589 Antisense
TTTTCAATGACCGGTACATGCCTCT 163 675 2592 Antisense
GAAACAATTTTCTCTGGATTCACAA 383 355 2639 Antisense
ACAATTTTCTCTGGATTCACAACAA 406 115 2642 Antisense
Sequence Source Affymetrix Proprietary Database