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[173613_s_at]

Description C43717 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y62E10A.13B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43717 /WB_GENE_ID=Y62E10A.13B /WP=CE24538 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk332d3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 91      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 58      6grp_total > 94      4grp_total > 24      6grp_cgc > 88      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3843
1 2 3 4 range
A 1055.5
(-3)
P 		3226.9
(0.7)
P 		3898.8
(1.8)
P 		4589.9
(3)
P 		3534
B 1098.4
(-3)
P 		3060.5
(0.3)
P 		3737.8
(1.4)
P 		4711.3
(3)
P 		3613
C 1025.9
(-3)
P 		3725.9
(1.2)
P 		3466.5
(0.8)
P 		4868.7
(3)
P 		3843
avr 1059.9
(-3) 		3337.8
(0.7) 		3701
(1.3) 		4723.3
(3) 		3663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1267
1 2 3 4 5 6 range
A 2793.6
(-0.7)
P 		2671.6
(-1.5)
P 		2434.9
(-3)
P 		3075.7
(1.1)
P 		3367
(3)
P 		2802.2
(-0.6)
P 		932
B 2698.8
(-0)
P 		2209.3
(-2.5)
P 		2099.7
(-3)
P 		2709.9
(0)
P 		3306.1
(3)
P 		2760.1
(0.3)
P 		1206
C 2906.3
(0.6)
P 		2524
(-2)
P 		2378.9
(-3)
P 		2836.4
(0.1)
P 		3263.5
(3)
P 		2811.8
(-0.1)
P 		885
avr 2799.6
(-0.1) 		2468.3
(-2) 		2304.5
(-3) 		2874
(0.4) 		3312.2
(3) 		2791.4
(-0.1) 		1008
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 869
1 2 3 4 range
A 384.3
(-3)
P 		700.5
(-0)
P 		1019.2
(3)
P 		671.9
(-0.3)
P 		635
B 350.3
(-3)
P 		755.9
(0.7)
P 		866.1
(1.7)
P 		1004
(3)
P 		654
C 339.6
(-3)
P 		1071.2
(2.1)
P 		1208.2
(3)
P 		820.9
(0.3)
P 		869
avr 358.1
(-3) 		842.5
(1.3) 		1031.2
(3) 		832.3
(1.2) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 833
1 2 3 4 5 6 range
A 515
(-3)
P 		950.2
(2.2)
P 		530.3
(-2.8)
P 		780.1
(0.2)
P 		1016
(3)
P 		682.3
(-1)
P 		501
B 939.1
(0.1)
P 		735.4
(-1.4)
P 		509.9
(-3)
P 		717.8
(-1.5)
P 		1343.2
(3)
P 		1029.2
(0.7)
P 		833
C 1077.2
(3)
P 		770.1
(-0.6)
P 		605.5
(-2.6)
P 		570.4
(-3)
P 		1056
(2.7)
P 		941.3
(1.4)
P 		507
avr 843.8
(0) 		818.6
(-0.3) 		548.6
(-3) 		689.4
(-1.6) 		1138.4
(3) 		884.3
(0.4) 		590
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173613_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24849
Sequence Type Exemplar sequence
Representative Public ID C43717 NCBI
Target Description C43717 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y62E10A.13B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43717 /WB_GENE_ID=Y62E10A.13B /WP=CE24538 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk332d3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070179 NCBI Caenorhabditis elegans Y62E10A.13a (Y62E10A.13) mRNA, complete cds. 11/11 None
Y62E10A.13a ENSEMBL cdna:known chromosome:CEL140:IV:13389126:13398768:-1 gene:Y62E10A.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178304 3 1 NM_070179 173613_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13389142-13396704(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y62E10A.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60608 Hypothetical protein Y62E10A.13a [Caenorhabditis elegans] ref|NP_502580.1| Y62E10A.13a [Caenorhabditis elegans] 1.0E-154
blast CAB60607 Hypothetical protein Y62E10A.13b [Caenorhabditis elegans] ref|NP_502581.1| Y62E10A.13b [Caenorhabditis elegans] 1.0E-146
blast CAC42380 Hypothetical protein Y62E10A.13c [Caenorhabditis elegans] ref|NP_502582.1| Y62E10A.13c [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.2E-11
Sequence
Target Sequence 
>C. ELEGANS:173613_S_AT
gacgacgagtagataattcatgtatctgtacatatcgtttttctttttttttcatatatt
ttccacacgttctcagttggctttactgtgcggttttgagcattttgagcatcattttct
aatcacctactagcgtatttctattttttttttctctcactgtgaatttttcccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGACGAGTAGATAATTCATGTAT 693 379 875 Antisense
GTATCTGTACATATCGTTTTTCTTT 151 455 896 Antisense
TTTTCATATATTTTCCACACGTTCT 703 675 923 Antisense
ATATATTTTCCACACGTTCTCAGTT 653 19 928 Antisense
TCCACACGTTCTCAGTTGGCTTTAC 79 587 936 Antisense
AGTTGGCTTTACTGTGCGGTTTTGA 525 7 949 Antisense
TACTGTGCGGTTTTGAGCATTTTGA 413 645 958 Antisense
TGAGCATTTTGAGCATCATTTTCTA 407 569 971 Antisense
GAGCATCATTTTCTAATCACCTACT 563 389 981 Antisense
AATCACCTACTAGCGTATTTCTATT 14 171 995 Antisense
TCTCTCACTGTGAATTTTTCCCTTC 74 613 1027 Antisense
Sequence Source Affymetrix Proprietary Database