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[173609_at]

Description CEK100C8R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y39B6B.GG /5_PRIME_EXT_DB=WormBase Gene ID /GB=D66432 /WB_GENE_ID=Y39B6B.GG /WP=CE21682 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk100c8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 15      6grp_total > 16      4grp_total > 55      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5116
1 2 3 4 range
A 5124.5
(3)
P 		809.6
(-2.1)
P 		1127.1
(-1.7)
P 		67
(-3)
A 		5058
B 3366.5
(3)
P 		623
(-2)
P 		1250.9
(-0.8)
P 		61.3
(-3)
A 		3305
C 4442.9
(3)
P 		617.7
(-2.2)
P 		1389.6
(-1.1)
P 		8.8
(-3)
A 		4434
avr 4311.3
(3) 		683.4
(-2.1) 		1255.9
(-1.3) 		45.7
(-3) 		4266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4785
1 2 3 4 5 6 range
A 3589.8
(3)
P 		2693.6
(1.5)
P 		675.7
(-2)
P 		274.2
(-2.7)
P 		920.9
(-1.6)
P 		78.9
(-3)
A 		3511
B 4864.1
(3)
P 		3571.2
(1.3)
P 		1051.3
(-1.9)
P 		511.7
(-2.6)
P 		773.1
(-2.2)
P 		169.1
(-3)
P 		4695
C 3765.9
(2.9)
P 		3804.4
(3)
P 		494.9
(-2.4)
P 		329.2
(-2.7)
P 		868.4
(-1.8)
P 		154.5
(-3)
P 		3650
avr 4073.3
(3) 		3356.4
(1.9) 		740.6
(-2.1) 		371.7
(-2.6) 		854.1
(-1.9) 		134.2
(-3) 		3939
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1864
1 2 3 4 range
A 1865.8
(3)
P 		175.7
(-2.5)
P 		294.7
(-2.1)
P 		9.8
(-3)
A 		1856
B 1073.5
(3)
P 		153.9
(-2.2)
P 		289.9
(-1.4)
P 		13.1
(-3)
A 		1060
C 1470.7
(3)
P 		177.6
(-2.3)
P 		484.3
(-1)
P 		1.5
(-3)
A 		1469
avr 1470
(3) 		169.1
(-2.3) 		356.3
(-1.6) 		8.1
(-3) 		1462

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1673
1 2 3 4 5 6 range
A 661.7
(1.1)
P 		958
(3)
P 		147.2
(-2.2)
P 		69.5
(-2.7)
P 		277.9
(-1.3)
P 		19.2
(-3)
A 		939
B 1692.5
(3)
P 		1188.7
(1.1)
P 		255.3
(-2.3)
P 		135.5
(-2.7)
P 		314.1
(-2.1)
P 		63.1
(-3)
P 		1629
C 1395.9
(3)
P 		1160.8
(2)
P 		126
(-2.7)
P 		66.2
(-2.9)
P 		281
(-2)
P 		51.7
(-3)
P 		1344
avr 1250
(3) 		1102.5
(2.3) 		176.2
(-2.3) 		90.4
(-2.8) 		291
(-1.8) 		44.7
(-3) 		1205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25613
Sequence Type Exemplar sequence
Representative Public ID CEK100C8R NCBI
Target Description CEK100C8R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y39B6B.GG /5_PRIME_EXT_DB=WormBase Gene ID /GB=D66432 /WB_GENE_ID=Y39B6B.GG /WP=CE21682 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk100c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171608(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171608 NCBI Caenorhabditis elegans Y39B6A.1 (Y39B6A.1) mRNA, complete cds. 11/11 None
Y39B6A.1.2 ENSEMBL cdna:known chromosome:CEL140:V:19203598:19206180:-1 gene:Y39B6A.1 11/11 None
Y39B6A.1.1 ENSEMBL cdna:known chromosome:CEL140:V:19203598:19206182:-1 gene:Y39B6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19203610-19206171(-) 94.6 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.1
Entrez Gene 180264 Entrez gene
SwissProt Q9NES7 EMBL-EBI
WormBase CE21682 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U133_PLUS_2:215704_AT filaggrin hs
HG-U133A:215704_AT filaggrin hs
HG-U133A_2:215704_AT filaggrin hs
HG-U95AV2:31542_AT filaggrin hs
HU35KSUBA:M60502_AT filaggrin hs
HUGENEFL:M60503_AT filaggrin hs
U133_X3P:HS.73995.0.S1_3P_AT filaggrin hs
MOUSE430A_2:1427268_AT similar to Acidic ribosomal phosphoprotein P0 mm
MOE430A:1427268_AT similar to Acidic ribosomal phosphoprotein P0 mm
MOUSE430_2:1427268_AT similar to Acidic ribosomal phosphoprotein P0 mm
MU11KSUBB:MSA.1652.0_AT similar to Acidic ribosomal phosphoprotein P0 mm
MG-U74AV2:100420_AT similar to Acidic ribosomal phosphoprotein P0 mm
MG-U74AV2:161981_R_AT similar to Acidic ribosomal phosphoprotein P0 mm
Protein Similarities
Method ID Description E-Value
blast CAC51077 Hypothetical protein Y39B6A.1 [Caenorhabditis elegans] ref|NP_741698.1| Y39B6A.1 [Caenorhabditis elegans] 2.0E-29
blast CAE73149 Hypothetical protein CBG20540 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:173609_AT
gaagagccactagacgggcggtcgatgagcttctgctcgccacaattgatgcgtcactgc
attacatgtactttttggataaatcctgaacagccttttttttttgtttgtatcgatttt
tctagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCCACTAGACGGGCGGTCGA 338 339 2209 Antisense
GCCACTAGACGGGCGGTCGATGAGC 663 275 2214 Antisense
TAGACGGGCGGTCGATGAGCTTCTG 7 651 2219 Antisense
GCTTCTGCTCGCCACAATTGATGCG 701 305 2237 Antisense
TCTGCTCGCCACAATTGATGCGTCA 268 609 2240 Antisense
GCTCGCCACAATTGATGCGTCACTG 158 297 2243 Antisense
GCCACAATTGATGCGTCACTGCATT 125 279 2247 Antisense
TGCGTCACTGCATTACATGTACTTT 344 583 2258 Antisense
TGTACTTTTTGGATAAATCCTGAAC 222 459 2275 Antisense
GATAAATCCTGAACAGCCTTTTTTT 212 423 2286 Antisense
TTTTGTTTGTATCGATTTTTCTAGC 396 677 2310 Antisense
Sequence Source Affymetrix Proprietary Database