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[173605_s_at]

Description C32797_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14A11.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C32797 /WB_GENE_ID=C14A11.6 /WP=CE08154 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk328b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_high_8_8 > 41      6grp_highest_nonorm > 81      6grp_total > 34      4grp_total > 54      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 424.6
(3)
P 		307.6
(0.5)
P 		290.2
(0.1)
P 		142.2
(-3)
A 		282
B 503.8
(3)
P 		303.4
(-0.7)
P 		228.5
(-2.1)
P 		181
(-3)
P 		323
C 520.1
(3)
P 		261.7
(-1.3)
P 		281.3
(-0.9)
P 		155.3
(-3)
P 		365
avr 482.8
(3) 		290.9
(-0.6) 		266.7
(-1) 		159.5
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 385.3
(3)
P 		380.6
(2.9)
P 		335.2
(1.5)
P 		238.8
(-1.5)
P 		212.9
(-2.3)
P 		191.3
(-3)
P 		194
B 253.2
(1.5)
P 		224.7
(0.3)
P 		244.2
(1.1)
P 		290.4
(3)
P 		142
(-3)
P 		202.3
(-0.6)
P 		148
C 269.8
(0.2)
P 		309.3
(1.8)
P 		338.6
(3)
P 		193.4
(-3)
P 		202.2
(-2.6)
P 		211.6
(-2.2)
P 		145
avr 302.8
(2.8) 		304.9
(2.9) 		306
(3) 		240.9
(-0.2) 		185.7
(-3) 		201.7
(-2.2) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 154.6
(3)
P 		66.8
(-0.9)
P 		75.9
(-0.5)
P 		20.8
(-3)
A 		134
B 160.7
(3)
P 		74.9
(-1.2)
P 		53
(-2.3)
P 		38.6
(-3)
P 		122
C 172.2
(3)
P 		75.2
(-1)
P 		98
(-0)
P 		26.2
(-3)
P 		146
avr 162.5
(3) 		72.3
(-1) 		75.6
(-0.9) 		28.5
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 71
(-1.4)
P 		135.4
(3)
P 		73
(-1.2)
P 		60.6
(-2.1)
P 		64.3
(-1.8)
P 		46.6
(-3)
P 		89
B 88.1
(3)
P 		74.8
(0.4)
P 		59.3
(-2.7)
P 		76.9
(0.8)
P 		57.7
(-3)
P 		75.4
(0.5)
P 		30
C 100
(3)
P 		94.4
(2.5)
P 		86.2
(1.6)
P 		38.9
(-3)
P 		65.4
(-0.4)
P 		70.8
(0.1)
P 		61
avr 86.4
(0.9) 		101.5
(3) 		72.8
(-1) 		58.8
(-3) 		62.5
(-2.5) 		64.3
(-2.2) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173605_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26193
Sequence Type Exemplar sequence
Representative Public ID C32797 NCBI
Target Description C32797_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14A11.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C32797 /WB_GENE_ID=C14A11.6 /WP=CE08154 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk328b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076088 NCBI Caenorhabditis elegans C14A11.6 (C14A11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000039996 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2808060:2809624:-1 9/11 None
C14A11.6 ENSEMBL cdna:known chromosome:CEL140:X:2807968:2814118:-1 gene:C14A11.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039983 5/11 Cross Hyb Matching Probes None
SNAP00000039984 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2807978-2814119(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A11.6
Entrez Gene 180572 Entrez gene
SwissProt O02137 EMBL-EBI
WormBase CE08154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52873 Hypothetical protein C14A11.6 [Caenorhabditis elegans] ref|NP_508489.1| C14A11.6 [Caenorhabditis elegans] 0.0
blast CAE58830 Hypothetical protein CBG02041 [Caenorhabditis briggsae] 3.0E-46
blast AAB52873 Hypothetical protein C14A11.6 [Caenorhabditis elegans] ref|NP_508489.1| C14A11.6 [Caenorhabditis elegans] 3.0E-34
blast CAE58831 Hypothetical protein CBG02042 [Caenorhabditis briggsae] 6.0E-22
Sequence
Target Sequence 
>C. ELEGANS:173605_S_AT
gtttactcgcttccgtgcgaatggtatgcgaaattcgtttgagcggaatctcgcccggca
ggaggaggaacgaaggatgcgaagaagtcgacttatggcaattttcgtcgccttcagcaa
gtggtaccaagtctgtgcggcaaccggcaaccgagttgccggttgccgaaagtctcggtt
gtcgcacagctctactagaactgctgacacaatagctgcttcgacatcaactcctccatc
taccaccagcaatataactccttctagaccaaccactagtgaacaatcaaacacaatcaa
aagaaaaaccgcgtttgaaaaagaagatgctccaccggcgaaacgatcaatggccacatc
caccgatgatgcgtatttctcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTACTCGCTTCCGTGCGAATGGT 19 451 1417 Antisense
TTCGTTTGAGCGGAATCTCGCCCGG 15 693 1450 Antisense
ATCTCGCCCGGCAGGAGGAGGAACG 633 19 1464 Antisense
TATGGCAATTTTCGTCGCCTTCAGC 36 655 1510 Antisense
AGTGGTACCAAGTCTGTGCGGCAAC 403 57 1536 Antisense
GTCGCACAGCTCTACTAGAACTGCT 327 475 1597 Antisense
ACAATAGCTGCTTCGACATCAACTC 320 115 1625 Antisense
TACCACCAGCAATATAACTCCTTCT 435 649 1657 Antisense
AACTCCTTCTAGACCAACCACTAGT 564 139 1672 Antisense
GAAACGATCAATGGCCACATCCACC 599 357 1756 Antisense
TCCACCGATGATGCGTATTTCTCTA 603 589 1775 Antisense
Sequence Source Affymetrix Proprietary Database