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[173604_at]

Description C32797_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14A11.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C32797 /WB_GENE_ID=C14A11.6 /WP=CE08154 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk328b9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 60      6grp_total > 25      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 790.9
(3)
P 		409.3
(-1.8)
P 		315.9
(-3)
P 		359.8
(-2.4)
P 		475
B 782.5
(3)
P 		332
(-3)
P 		420.3
(-1.8)
P 		375.1
(-2.4)
P 		451
C 864.2
(3)
P 		385.2
(-2.7)
P 		498.1
(-1.3)
P 		358
(-3)
P 		506
avr 812.5
(3) 		375.5
(-2.9) 		411.4
(-2.4) 		364.3
(-3) 		448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 499.2
(1.1)
P 		607.9
(3)
P 		460.4
(0.5)
P 		265.4
(-2.9)
P 		316
(-2)
P 		259.2
(-3)
P 		349
B 586.4
(3)
P 		453.8
(0)
P 		470.9
(0.4)
P 		380.6
(-1.6)
P 		319.2
(-3)
P 		386.5
(-1.5)
P 		267
C 505.5
(2.6)
P 		518.4
(3)
P 		364.8
(-1.5)
P 		313.5
(-3)
P 		358.9
(-1.7)
P 		404.3
(-0.3)
P 		205
avr 530.4
(3) 		526.7
(2.9) 		432
(0.2) 		319.8
(-3) 		331.4
(-2.7) 		350
(-2.1) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 288
(3)
P 		88.8
(-2.1)
P 		82.6
(-2.2)
P 		52.7
(-3)
P 		235
B 249.5
(3)
P 		82
(-2.9)
P 		97.4
(-2.4)
P 		79.9
(-3)
P 		170
C 286.1
(3)
P 		110.7
(-1.7)
P 		173.6
(0)
P 		60.4
(-3)
P 		226
avr 274.5
(3) 		93.8
(-2.2) 		117.9
(-1.5) 		64.3
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 92
(-1.9)
P 		216.2
(3)
P 		100.3
(-1.5)
P 		67.3
(-2.8)
P 		95.4
(-1.7)
P 		63.1
(-3)
P 		153
B 204
(3)
P 		151
(-0.1)
P 		114.3
(-2.2)
P 		100.8
(-3)
P 		129.7
(-1.3)
P 		144.1
(-0.5)
P 		103
C 187.4
(3)
P 		158.2
(1.6)
P 		92.9
(-1.6)
P 		63
(-3)
P 		116.1
(-0.4)
P 		135.3
(0.5)
P 		124
avr 161.1
(2.1) 		175.1
(3) 		102.5
(-1.4) 		77
(-3) 		113.7
(-0.8) 		114.2
(-0.7) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26193
Sequence Type Exemplar sequence
Representative Public ID C32797 NCBI
Target Description C32797_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14A11.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C32797 /WB_GENE_ID=C14A11.6 /WP=CE08154 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk328b9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076088 NCBI Caenorhabditis elegans C14A11.6 (C14A11.6) mRNA, complete cds. 11/11 None
C14A11.6 ENSEMBL cdna:known chromosome:CEL140:X:2807968:2814118:-1 gene:C14A11.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039996 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2807978-2814119(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A11.6
Entrez Gene 180572 Entrez gene
SwissProt O02137 EMBL-EBI
WormBase CE08154 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52873 Hypothetical protein C14A11.6 [Caenorhabditis elegans] ref|NP_508489.1| C14A11.6 [Caenorhabditis elegans] 0.0
blast CAE58830 Hypothetical protein CBG02041 [Caenorhabditis briggsae] 3.0E-46
Sequence
Target Sequence 
>C. ELEGANS:173604_AT
ctctaaattttaagtcgaagcgcaagcgactatgttccacagaactcggaaatcgacagc
tgctgaaatcatttacccctcgtgcaatactacttcaaaactcaaattcttcaaatactc
gactcagaatttcctgatttaattgcactgaattatttggcctctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTAAATTTTAAGTCGAAGCGCAA 588 1 1795 Antisense
CGAAGCGCAAGCGACTATGTTCCAC 427 253 1810 Antisense
GCAAGCGACTATGTTCCACAGAACT 395 319 1816 Antisense
GCGACTATGTTCCACAGAACTCGGA 298 289 1820 Antisense
GAACTCGGAAATCGACAGCTGCTGA 254 349 1836 Antisense
CAGCTGCTGAAATCATTTACCCCTC 567 203 1851 Antisense
CCCCTCGTGCAATACTACTTCAAAA 502 261 1870 Antisense
TGCAATACTACTTCAAAACTCAAAT 234 571 1877 Antisense
CAAATACTCGACTCAGAATTTCCTG 416 193 1906 Antisense
GAATTTCCTGATTTAATTGCACTGA 692 325 1921 Antisense
TGCACTGAATTATTTGGCCTCTCAC 576 577 1938 Antisense
Sequence Source Affymetrix Proprietary Database