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[173603_at]

Description CEK017AXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T11G6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32449 /WB_GENE_ID=T11G6.5 /WP=CE18954 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 74      6grp_total > 36      4grp_total > 31      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 959.4
(3)
P 		570
(-3)
P 		589
(-2.7)
P 		750.2
(-0.2)
P 		389
B 855
(3)
P 		460.1
(-3)
P 		511.8
(-2.2)
P 		757.7
(1.5)
P 		395
C 781.5
(3)
P 		558.4
(-3)
P 		662.9
(-0.2)
P 		596.5
(-2)
P 		223
avr 865.3
(3) 		529.5
(-3) 		587.9
(-2) 		701.5
(0.1) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 790.5
(1.7)
P 		865
(3)
P 		510.3
(-3)
P 		670.4
(-0.3)
P 		712.6
(0.4)
P 		775.3
(1.5)
P 		355
B 791
(1.3)
P 		799.7
(1.5)
P 		651.2
(-1.6)
P 		871.8
(3)
P 		582.5
(-3)
P 		712.6
(-0.3)
P 		289
C 733.9
(0.1)
P 		822.9
(2)
P 		871.6
(3)
P 		669.3
(-1.2)
P 		582.6
(-3)
P 		716.8
(-0.2)
P 		289
avr 771.8
(1.3) 		829.2
(3) 		677.7
(-1.5) 		737.2
(0.3) 		625.9
(-3) 		734.9
(0.2) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 349.3
(3)
P 		123.7
(-2.7)
P 		154
(-1.9)
P 		109.8
(-3)
P 		240
B 272.6
(3)
P 		113.6
(-3)
P 		118.6
(-2.8)
P 		161.5
(-1.2)
P 		159
C 258.7
(3)
P 		160.6
(-0.7)
P 		231
(1.9)
P 		100.6
(-3)
P 		158
avr 293.5
(3) 		132.6
(-2.7) 		167.9
(-1.4) 		124
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 145.7
(-1.9)
P 		307.6
(3)
P 		111.1
(-3)
P 		170
(-1.2)
P 		215
(0.2)
P 		188.7
(-0.6)
P 		197
B 275.2
(3)
P 		266.2
(2.5)
P 		158.1
(-3)
P 		230.9
(0.7)
P 		236.7
(1)
P 		265.7
(2.5)
P 		117
C 272
(3)
P 		251.1
(2.1)
P 		221.8
(0.8)
P 		134.6
(-3)
P 		188.5
(-0.6)
P 		240
(1.6)
P 		137
avr 231
(0.6) 		275
(3) 		163.7
(-3) 		178.5
(-2.2) 		213.4
(-0.3) 		231.5
(0.7) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24480
Sequence Type Exemplar sequence
Representative Public ID CEK017AXR NCBI
Target Description CEK017AXR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T11G6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32449 /WB_GENE_ID=T11G6.5 /WP=CE18954 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069607 NCBI Caenorhabditis elegans T11G6.5 (T11G6.5) mRNA, complete cds. 11/11 None
T11G6.5 ENSEMBL cdna:known chromosome:CEL140:IV:10835810:10842727:-1 gene:T11G6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10835838-10842724(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11G6.5
Entrez Gene 177976 Entrez gene
SwissProt Q22411 EMBL-EBI
WormBase CE32932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 0.0
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 5.0E-40
blast AAK39355 Hypothetical protein Y73B3A.10 [Caenorhabditis elegans] ref|NP_508062.2| Y73B3A.10 [Caenorhabditis elegans] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:173603_AT
ccggtcacaatctaaatatcacttcaagctcgacaatgtttccccagctttatattaatt
atatgtttgtcatattcttggaaggattcccttttgttagtcatttctagaatttatcgc
caaaagtcaaaatacgcccctcatcaattgttgtgaaacaatagtatacccgtgttgttt
agccatgtcatgttcgaattcccagttcactaatgttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGTCACAATCTAAATATCACTTC 289 265 4268 Antisense
AAGCTCGACAATGTTTCCCCAGCTT 150 151 4293 Antisense
ATGTTTCCCCAGCTTTATATTAATT 689 45 4303 Antisense
TTGTCATATTCTTGGAAGGATTCCC 594 705 4334 Antisense
GGATTCCCTTTTGTTAGTCATTTCT 404 509 4351 Antisense
GTCATTTCTAGAATTTATCGCCAAA 465 467 4367 Antisense
GCCAAAAGTCAAAATACGCCCCTCA 255 277 4386 Antisense
TACGCCCCTCATCAATTGTTGTGAA 680 647 4400 Antisense
ATACCCGTGTTGTTTAGCCATGTCA 356 23 4433 Antisense
TAGCCATGTCATGTTCGAATTCCCA 381 651 4447 Antisense
GAATTCCCAGTTCACTAATGTTTTG 138 323 4463 Antisense
Sequence Source Affymetrix Proprietary Database