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[173602_at]

Description C45319 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y17G7B.17 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45319 /WB_GENE_ID=Y17G7B.17 /WP=CE19051 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk392b5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 93      6grp_total > 69      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 765
1 2 3 4 range
A 325.4
(-3)
P 		331.9
(-2.9)
P 		453.7
(-1.9)
P 		1033.7
(3)
P 		708
B 283.1
(-2.9)
P 		268.8
(-3)
P 		389.6
(-2)
P 		985.3
(3)
P 		717
C 294.9
(-3)
P 		354.7
(-2.5)
P 		340.3
(-2.6)
P 		961.1
(3)
P 		666
avr 301.1
(-3) 		318.5
(-2.8) 		394.5
(-2.2) 		993.4
(3) 		692

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 415.3
(-1.2)
P 		325.7
(-2.4)
P 		325.5
(-2.4)
P 		284.1
(-3)
P 		499.5
(-0.1)
P 		731.5
(3)
P 		447
B 463.2
(-0.1)
P 		353.5
(-1.9)
P 		286.3
(-3)
P 		437.3
(-0.5)
P 		476.6
(0.1)
P 		655.9
(3)
P 		370
C 547.3
(0.2)
P 		361
(-2.6)
P 		335.2
(-3)
P 		350.3
(-2.8)
P 		512.4
(-0.4)
P 		738.4
(3)
P 		403
avr 475.3
(-0.6) 		346.7
(-2.5) 		315.7
(-3) 		357.2
(-2.4) 		496.2
(-0.2) 		708.6
(3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 118.5
(0.5)
P 		72.1
(-3)
P 		118.6
(0.5)
P 		151.3
(3)
P 		79
B 90.3
(-2)
P 		66.4
(-3)
P 		90.3
(-2)
P 		210
(3)
P 		144
C 97.6
(-3)
P 		102
(-2.6)
P 		118.6
(-1)
P 		162.1
(3)
P 		65
avr 102.1
(-1.6) 		80.2
(-3) 		109.2
(-1.2) 		174.5
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 76.6
(-2.7)
P 		115.8
(-0.5)
P 		70.9
(-3)
P 		72
(-2.9)
P 		150.7
(1.5)
P 		178.1
(3)
P 		107
B 161.2
(0.1)
P 		117.7
(-1.3)
P 		69.5
(-3)
P 		115.8
(-1.4)
P 		193.7
(1.3)
P 		244.6
(3)
P 		175
C 202.9
(1.5)
P 		110.2
(-1.6)
P 		85.3
(-2.5)
P 		70.4
(-3)
P 		165.8
(0.2)
P 		247.2
(3)
P 		177
avr 146.9
(-0.1) 		114.6
(-1.4) 		75.2
(-3) 		86.1
(-2.6) 		170.1
(0.8) 		223.3
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23428
Sequence Type Exemplar sequence
Representative Public ID C45319 NCBI
Target Description C45319 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y17G7B.17 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C45319 /WB_GENE_ID=Y17G7B.17 /WP=CE19051 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk392b5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064170 NCBI Caenorhabditis elegans Y17G7B.17 (Y17G7B.17) mRNA, complete cds. 11/11 None
Y17G7B.17 ENSEMBL cdna:known chromosome:CEL140:II:12092337:12099892:-1 gene:Y17G7B.17 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030331 5/11 Cross Hyb Matching Probes None
GENEFINDER00000030392 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12092344-12099817(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G7B.17
Entrez Gene 174849 Entrez gene
SwissProt Q9XXH7 EMBL-EBI
WormBase CE35650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19464 Hypothetical protein Y17G7B.17 [Caenorhabditis elegans] ref|NP_496571.2| Y17G7B.17 [Caenorhabditis elegans] 1.0E-104
blast CAE73542 Hypothetical protein CBG21010 [Caenorhabditis briggsae] 1.0E-56
blast EAL26529 GA20964-PA [Drosophila pseudoobscura] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:173602_AT
ggcggcccactaatccgtgaaataagcgaagaagaagccgaacaggcagcctcatcaatc
ccaaaaagacgtcgcggacagcaataatttctctcttttttttttgccaaaattttatcc
actttcccccaaaaaaattcatctcaaattgagattttttccagccgccacctacgcaaa
catttttcttctttctttaaaaatcaggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGCCCACTAATCCGTGAAATAA 96 541 583 Antisense
GAAGAAGCCGAACAGGCAGCCTCAT 620 339 613 Antisense
GCCGAACAGGCAGCCTCATCAATCC 367 285 619 Antisense
GCCTCATCAATCCCAAAAAGACGTC 7 281 631 Antisense
ATCCCAAAAAGACGTCGCGGACAGC 642 35 640 Antisense
GTCGCGGACAGCAATAATTTCTCTC 396 475 653 Antisense
ACAGCAATAATTTCTCTCTTTTTTT 230 109 660 Antisense
CAAATTGAGATTTTTTCCAGCCGCC 212 189 727 Antisense
GCCACCTACGCAAACATTTTTCTTC 31 279 749 Antisense
TACGCAAACATTTTTCTTCTTTCTT 175 649 755 Antisense
TCTTCTTTCTTTAAAAATCAGGAAT 404 617 769 Antisense
Sequence Source Affymetrix Proprietary Database