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[173600_s_at]

Description CEK007F6R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R07E4.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D28007 /WB_GENE_ID=R07E4.5 /WP=CE04820 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 81      6grp_total > 27      4grp_total > 04      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 214.3
(-1.9)
P 		209.3
(-2)
P 		177.4
(-3)
P 		376.4
(3)
P 		199
B 288.3
(-1.5)
P 		242.8
(-3)
P 		265.9
(-2.2)
P 		420.8
(3)
P 		178
C 243.3
(-0.9)
P 		218.3
(-2.1)
P 		200.8
(-3)
P 		320.4
(3)
P 		120
avr 248.6
(-1.7) 		223.5
(-2.7) 		214.7
(-3) 		372.5
(3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 426.7
(3)
P 		269.4
(-1.3)
P 		207
(-3)
P 		246.4
(-1.9)
P 		296.4
(-0.6)
P 		325.4
(0.2)
P 		220
B 336.9
(3)
P 		290.6
(0.9)
P 		205.8
(-2.9)
P 		215.3
(-2.5)
P 		204.3
(-3)
P 		211.4
(-2.7)
P 		133
C 276.6
(2.5)
P 		285.2
(3)
P 		174.5
(-3)
P 		235.8
(0.3)
P 		207.4
(-1.2)
P 		216.9
(-0.7)
P 		111
avr 346.7
(3) 		281.7
(0.4) 		195.8
(-3) 		232.5
(-1.5) 		236
(-1.4) 		251.2
(-0.8) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 78
(3)
P 		45.4
(-3)
P 		46.4
(-2.8)
P 		55.1
(-1.2)
P 		33
B 91.9
(3)
P 		60
(-3)
P 		61.6
(-2.7)
P 		89.7
(2.6)
P 		32
C 80.5
(3)
P 		62.8
(-1)
P 		70
(0.6)
P 		54
(-3)
P 		27
avr 83.5
(3) 		56.1
(-3) 		59.3
(-2.3) 		66.3
(-0.8) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 78.6
(1)
P 		95.8
(3)
P 		45.1
(-3)
P 		62.5
(-0.9)
P 		89.4
(2.2)
P 		79.2
(1)
P 		51
B 117.2
(3)
P 		96.7
(1.2)
P 		50
(-3)
P 		57
(-2.4)
P 		83
(-0.1)
P 		78.8
(-0.4)
P 		67
C 102.5
(3)
P 		87
(1.4)
P 		44.4
(-3)
P 		47.4
(-2.7)
P 		67.1
(-0.7)
P 		72.6
(-0.1)
P 		58
avr 99.4
(3) 		93.2
(2.3) 		46.5
(-3) 		55.6
(-2) 		79.8
(0.8) 		76.9
(0.4) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173600_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25995
Sequence Type Exemplar sequence
Representative Public ID CEK007F6R NCBI
Target Description CEK007F6R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=R07E4.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D28007 /WB_GENE_ID=R07E4.5 /WP=CE04820 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076594 NCBI Caenorhabditis elegans R07E4.5 (R07E4.5) mRNA, complete cds. 11/11 None
SNAP00000014984 ENSEMBL cdna:SNAP chromosome:CEL140:X:5949630:5953128:-1 11/11 None
GENEFINDER00000014991 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5949630:5953080:-1 11/11 None
R07E4.5 ENSEMBL cdna:known chromosome:CEL140:X:5949501:5953132:-1 gene:R07E4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5949511-5953129(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07E4.5
Entrez Gene 180861 Entrez gene
SwissProt Q21816 EMBL-EBI
WormBase CE04820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508995 R07E4.5 [Caenorhabditis elegans] gb|AAA80404.1| Hypothetical protein R07E4.5 [Caenorhabditis elegans] 0.0
blast CAE68826 Hypothetical protein CBG14785 [Caenorhabditis briggsae] 2.0E-48
Sequence
Target Sequence 
>C. ELEGANS:173600_S_AT
acagttgtcggcccagagccaaatcatgattacaccaaagtgaccggatggtactcacca
gaagccatgcaattctatgtgaacaaaatggtccgggctctgcgaaaacttcaggaccga
tctgctttatttgagaaggaataccagaacatgactcggatggtgatttatggtcagagc
cctgaaatggctcgacagtttgcaatattaattcgtgaggagtcatatgggcttgagaga
caggctgttccagtagccgacggtgctgctcagtactttgagcaactcagcgagcaaatg
ctttatcagccaagaccaagaaaggcggtttcatcaagacgtcatcattacactcagccg
cacccacaccatcagcagatgccacatcatcagccacatctgcaccatgcccatcatcct
gtacatccacatcgtggaccacgcgcctcgcattcgcagcatcttcagcatggacagtac
gctcaccatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTTGTCGGCCCAGAGCCAAATC 277 105 1958 Antisense
GAACAAAATGGTCCGGGCTCTGCGA 690 351 2038 Antisense
AACTTCAGGACCGATCTGCTTTATT 446 139 2064 Antisense
GCCCTGAAATGGCTCGACAGTTTGC 75 287 2136 Antisense
GAGACAGGCTGTTCCAGTAGCCGAC 538 393 2194 Antisense
AAGGCGGTTTCATCAAGACGTCATC 632 159 2279 Antisense
CAAGACGTCATCATTACACTCAGCC 453 185 2292 Antisense
AGATGCCACATCATCAGCCACATCT 537 67 2334 Antisense
TCATCCTGTACATCCACATCGTGGA 148 623 2371 Antisense
TTCGCAGCATCTTCAGCATGGACAG 339 689 2410 Antisense
GCATGGACAGTACGCTCACCATACT 607 309 2425 Antisense
Sequence Source Affymetrix Proprietary Database