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[173599_s_at]

Description C68978 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y48G10A.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68978 /WB_GENE_ID=Y48G10A.3 /WP=CE25314 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298d6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 78      6grp_total > 58      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 1760.8
(0.3)
P 		1493.7
(-3)
P 		1676.7
(-0.7)
P 		1980.7
(3)
P 		487
B 1628.5
(-2.6)
P 		1646.9
(-2.4)
P 		1597.1
(-3)
P 		2116.1
(3)
P 		519
C 1840.6
(-0.3)
P 		1753.9
(-1)
P 		1519.3
(-3)
P 		2228.9
(3)
P 		710
avr 1743.3
(-1.3) 		1631.5
(-2.6) 		1597.7
(-3) 		2108.6
(3) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 793
1 2 3 4 5 6 range
A 1800.3
(3)
P 		1376.8
(-3)
P 		1650.1
(0.9)
P 		1475.6
(-1.6)
P 		1684.8
(1.4)
P 		1726.8
(2)
P 		424
B 2020.5
(3)
P 		1319.1
(-3)
P 		1721.8
(0.4)
P 		1606.6
(-0.5)
P 		1349.6
(-2.7)
P 		1939.8
(2.3)
P 		701
C 1461.5
(-1.4)
P 		1248.7
(-3)
P 		1683.3
(0.3)
P 		2041.4
(3)
P 		1515.1
(-1)
P 		1996.1
(2.7)
P 		793
avr 1760.8
(1.7) 		1314.9
(-3) 		1685.1
(0.9) 		1707.9
(1.1) 		1516.5
(-0.9) 		1887.6
(3) 		573
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 641.1
(3)
P 		324.2
(-2.4)
P 		438.3
(-0.5)
P 		289.9
(-3)
P 		351
B 519.3
(3)
P 		406.8
(-1.5)
P 		370.1
(-3)
P 		450.9
(0.2)
P 		149
C 609.3
(3)
P 		504.2
(0.3)
P 		529.5
(0.9)
P 		375.8
(-3)
P 		234
avr 589.9
(3) 		411.7
(-1.9) 		446
(-1) 		372.2
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 331.9
(-3)
P 		489.7
(2.4)
P 		359.4
(-2.1)
P 		374.2
(-1.6)
P 		508.4
(3)
P 		420.4
(0)
P 		177
B 703
(2.6)
P 		439.1
(-2.6)
P 		418.1
(-3)
P 		425.5
(-2.9)
P 		548.3
(-0.4)
P 		723.3
(3)
P 		305
C 541.7
(0.4)
P 		381
(-3)
P 		428.4
(-2)
P 		410.5
(-2.4)
P 		490.3
(-0.7)
P 		668.2
(3)
P 		287
avr 525.5
(0.7) 		436.6
(-2) 		402
(-3) 		403.4
(-3) 		515.7
(0.4) 		604
(3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173599_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23036
Sequence Type Exemplar sequence
Representative Public ID C68978 NCBI
Target Description C68978 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y48G10A.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68978 /WB_GENE_ID=Y48G10A.3 /WP=CE25314 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298d6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060968 NCBI Caenorhabditis elegans Y48G10A.3 (Y48G10A.3) mRNA, complete cds. 11/11 None
SNAP00000010014 ENSEMBL cdna:SNAP chromosome:CEL140:I:13463641:13496537:-1 11/11 None
GENEFINDER00000010019 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13479933:13480643:-1 11/11 None
Y48G10A.3 ENSEMBL cdna:known chromosome:CEL140:I:13479906:13482304:-1 gene:Y48G10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13479853-13482232(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48G10A.3
Entrez Gene 173217 Entrez gene
SwissProt Q9U283 EMBL-EBI
WormBase CE25314 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247979_AT Ndr family protein at
CANINE:1588840_AT similar to N-myc downstream-regulated gene 3 isoform a cfa
CANINE_2:CFA.10629.1.A1_AT similar to N-myc downstream-regulated gene 3 isoform a cfa
CANINE_2:CFAAFFX.13608.1.S1_AT similar to N-myc downstream-regulated gene 3 isoform a cfa
CANINE_2:CFAAFFX.13608.1.S1_S_AT similar to N-myc downstream-regulated gene 3 isoform a cfa
CHICKEN:GGAAFFX.24331.1.S1_S_AT similar to Ndrg3 protein gga
HG-U133_PLUS_2:217286_S_AT NDRG family member 3 hs
HG-U133A_2:217286_S_AT NDRG family member 3 hs
HG-U133A:217286_S_AT NDRG family member 3 hs
HG-U133_PLUS_2:221082_S_AT NDRG family member 3 hs
HG-U133A:221082_S_AT NDRG family member 3 hs
HG-FOCUS:221082_S_AT NDRG family member 3 hs
HG-U133A_2:221082_S_AT NDRG family member 3 hs
HG-U133_PLUS_2:224368_S_AT NDRG family member 3 hs
HG-U133B:224368_S_AT NDRG family member 3 hs
HG-U95C:60062_S_AT NDRG family member 3 hs
HU35KSUBA:H49440_AT NDRG family member 3 hs
HU35KSUBB:RC_AA113356_AT NDRG family member 3 hs
HU35KSUBB:RC_T03438_S_AT NDRG family member 3 hs
U133_X3P:G11968028_3P_S_AT NDRG family member 3 hs
U133_X3P:HS.240615.3.A1_3P_A_AT NDRG family member 3 hs
HG-U95B:57107_AT NDRG family member 3 hs
HG-U95C:65773_AT NDRG family member 3 hs
HG-U95E:73413_AT NDRG family member 3 hs
MG-U74AV2:98554_AT N-myc downstream regulated gene 3 mm
MG-U74BV2:164345_R_AT N-myc downstream regulated gene 3 mm
MOE430A:1417664_A_AT N-myc downstream regulated gene 3 mm
MOUSE430A_2:1417664_A_AT N-myc downstream regulated gene 3 mm
MOUSE430_2:1417664_A_AT N-myc downstream regulated gene 3 mm
MOE430A:1417663_A_AT N-myc downstream regulated gene 3 mm
MOUSE430A_2:1417663_A_AT N-myc downstream regulated gene 3 mm
MOUSE430_2:1417663_A_AT N-myc downstream regulated gene 3 mm
MG-U74CV2:132555_AT N-myc downstream regulated gene 3, mRNA (cDNA clone MGC:21649 IMAGE:4500970) mm
MU19KSUBB:TC33249_AT N-myc downstream regulated gene 3, mRNA (cDNA clone MGC:21649 IMAGE:4500970) mm
MU19KSUBC:TC35443_AT N-myc downstream regulated gene 3, mRNA (cDNA clone MGC:21649 IMAGE:4500970) mm
MU19KSUBC:TC35950_AT N-myc downstream regulated gene 3, mRNA (cDNA clone MGC:21649 IMAGE:4500970) mm
RG-U34C:RC_AI230982_AT similar to N-myc downstream regulated gene 3 rn
RAE230A:1370903_A_AT similar to N-myc downstream regulated gene 3 rn
RAT230_2:1370903_A_AT similar to N-myc downstream regulated gene 3 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30154 cell differentiation inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63372 Hypothetical protein Y48G10A.3 [Caenorhabditis elegans] ref|NP_493369.1| Y48G10A.3 [Caenorhabditis elegans] 0.0
blast CAE63538 Hypothetical protein CBG08019 [Caenorhabditis briggsae] 0.0
blast CAB63373 Hypothetical protein Y48G10A.4 [Caenorhabditis elegans] ref|NP_493368.1| Y48G10A.4 [Caenorhabditis elegans] 0.0
blast CAE63537 Hypothetical protein CBG08018 [Caenorhabditis briggsae] 0.0
blast CAB63371 Hypothetical protein Y48G10A.2 [Caenorhabditis elegans] ref|NP_493370.1| Y48G10A.2 [Caenorhabditis elegans] 0.0
blast CAB63372 Hypothetical protein Y48G10A.3 [Caenorhabditis elegans] ref|NP_493369.1| Y48G10A.3 [Caenorhabditis elegans] 1.0E-137
blast CAE63538 Hypothetical protein CBG08019 [Caenorhabditis briggsae] 1.0E-131
blast XP_396456 PREDICTED: similar to CG15669-PI, isoform I [Apis mellifera] 5.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR004142 EMBL-EBI Ndr family 1.0E-126
Pfam IPR004142 EMBL-EBI Ndr family 9.8E-42
Pfam IPR004142 EMBL-EBI Ndr family 6.5E-122
Pfam IPR004142 EMBL-EBI Ndr family 5.2E-118
Sequence
Target Sequence 
>C. ELEGANS:173599_S_AT
gtcctcgtcaattgctgttctggaaagtcgggatgggtcgagtggggatatgagaaatgg
aatacatcgtatcttcgtaaagttggcatgacaaaattcactgtggattatctgatgtgg
catcattttggcagaaattatgatcgttgcagtccggatatcgttcgtcagtatcgtgtc
ttcttccagcaccttccgaatccgaatagcctcgccgaattcattgaatcctacattcaa
cggaccccactccctatctcacgtgacggaaccaccggtgttcagcttaaagtccctgtg
ctccagctcgtcggagccggaagcgctcacgttgaggatacggtagaggtgaatacgaag
ttggacccggcacacgccgattggattaagatatccgattcgtgtggtcttgtgcttgac
gatcgaccggacgctgtgacggagagcatgatgctctttttgcagggattgggatatttt
ccgacgcttaatgtgatgaagatgacgaaaaagatgcaggagacgcagaatggaggcttt
gctgccgttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCTCGTCAATTGCTGTTCTGGAA 478 475 473 Antisense
GATCGTTGCAGTCCGGATATCGTTC 589 417 614 Antisense
ATCGTTCGTCAGTATCGTGTCTTCT 375 35 632 Antisense
CACCTTCCGAATCCGAATAGCCTCG 527 199 662 Antisense
AGCCTCGCCGAATTCATTGAATCCT 650 83 680 Antisense
CTATCTCACGTGACGGAACCACCGG 543 223 726 Antisense
CACCGGTGTTCAGCTTAAAGTCCCT 373 87 745 Antisense
AGCCGGAAGCGCTCACGTTGAGGAT 36 83 787 Antisense
GAATACGAAGTTGGACCCGGCACAC 577 323 823 Antisense
ATATCCGATTCGTGTGGTCTTGTGC 155 21 863 Antisense
GAATGGAGGCTTTGCTGCCGTTGCT 229 333 1000 Antisense
Sequence Source Affymetrix Proprietary Database