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[173598_s_at]

Description C71226 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y75B8A.32 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C71226 /WB_GENE_ID=Y75B8A.32 /WP=CE23043 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442e5 : 5prime end, single read.
Cluster 6grp_total > 82      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 2.4
(-3)
A 		19.4
(3)
A 		12.2
(0.5)
A 		15
(1.4)
A 		17
B 13.4
(-2.4)
A 		33.2
(0.7)
A 		47.6
(3)
A 		9.3
(-3)
A 		38
C 18.1
(3)
A 		0.8
(-3)
A 		5.6
(-1.3)
A 		12.1
(0.9)
A 		17
avr 11.3
(-3) 		17.8
(0.7) 		21.8
(3) 		12.1
(-2.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 5.9
(-3)
A 		36.8
(3)
A 		24.2
(0.6)
A 		11.5
(-1.9)
A 		34.8
(2.6)
A 		12.7
(-1.7)
A 		31
B 18.1
(-3)
A 		21.8
(0.6)
A 		22
(0.8)
A 		24.2
(3)
A 		21
(-0.1)
P 		20.1
(-1)
A 		6
C 13
(-3)
A 		27.3
(-1.5)
A 		31.1
(-1.1)
A 		70.6
(3)
P 		34.8
(-0.7)
A 		28.6
(-1.4)
A 		58
avr 12.3
(-3) 		28.6
(1.2) 		25.8
(0.5) 		35.4
(3) 		30.2
(1.6) 		20.5
(-0.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-3)
A 		4.2
(3)
A 		3.2
(1.2)
A 		2.2
(-0.6)
A 		3
B 4.3
(-1.5)
A 		8.2
(1.1)
A 		11
(3)
A 		2
(-3)
A 		9
C 6
(3)
A 		0.2
(-3)
A 		2
(-1.1)
A 		2
(-1.1)
A 		6
avr 3.7
(-0.1) 		4.2
(0.8) 		5.4
(3) 		2.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-3)
A 		13.1
(3)
A 		5.3
(-0.9)
A 		2.9
(-2.1)
A 		10.5
(1.7)
A 		3.1
(-2)
A 		12
B 6.3
(-1.1)
A 		7.3
(0.8)
A 		5.3
(-3)
A 		6.4
(-0.9)
A 		8.5
(3)
P 		7.5
(1.1)
A 		3
C 4.8
(-3)
A 		8.3
(-0.8)
A 		7.9
(-1)
A 		14.2
(3)
P 		11.3
(1.1)
A 		9.6
(0.1)
A 		9
avr 4.1
(-3) 		9.6
(2.5) 		6.2
(-0.9) 		7.8
(0.7) 		10.1
(3) 		6.7
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173598_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23874
Sequence Type Exemplar sequence
Representative Public ID C71226 NCBI
Target Description C71226 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y75B8A.32 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C71226 /WB_GENE_ID=Y75B8A.32 /WP=CE23043 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk442e5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067204 NCBI Caenorhabditis elegans Y75B8A.32 (Y75B8A.32) mRNA, complete cds. 11/11 None
GENEFINDER00000020192 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12354956:12358401:-1 11/11 None
Y75B8A.32 ENSEMBL cdna:known chromosome:CEL140:III:12354819:12358436:-1 gene:Y75B8A.32 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020099 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12354853-12358398(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.32
Entrez Gene 176659 Entrez gene
SwissProt Q9XW77 EMBL-EBI
WormBase CE23043 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22092 Hypothetical protein Y75B8A.32 [Caenorhabditis elegans] ref|NP_499605.1| Y75B8A.32 [Caenorhabditis elegans] 0.0
blast AAB42291 Hypothetical protein F53E10.5 [Caenorhabditis elegans] ref|NP_503712.1| F53E10.5 [Caenorhabditis elegans] 3.0E-25
blast CAB54500 Hypothetical protein Y75B8A.35a [Caenorhabditis elegans] ref|NP_499602.3| bZIP transcription factor family member (zip-1) [Caenorhabditis elegans] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:173598_S_AT
acaccgccacttacgatttaaagcaaaaaaagaaacttgaggatgcgcagaataagaatc
tggaagttgaatcacttgtgaacgaaaccaagtataagacacaactcagaaggaacaaaa
ttgtggaaaagtatcaagttctatcggagcgatataatacacactatttttacgggagct
tcgaagacttcgttgggaagctccaacaagaggaatataggaaaatgaatgagataacgg
cggaaaacagggaagatattggaaatctaaaggagatgtattcagctgctgagaaattga
tagaaacagcgaagggatcgagcaaaacacgcgcgaagcaaagtgcaaagacgaagatgt
tagaatatcaaaacagatgcggagaagtggaaatcgaaaagctccaagcaatttcggaaa
cattggagcagatcgcaatgcatatagatcaattcgtattggaaaatggtatccctgatg
atattttccacgacggtcttcgggcagatatgttcgaaccaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCGCCACTTACGATTTAAAGCA 252 109 822 Antisense
AAAGTATCAAGTTCTATCGGAGCGA 189 123 949 Antisense
ATCGGAGCGATATAATACACACTAT 221 35 964 Antisense
TACACACTATTTTTACGGGAGCTTC 64 641 979 Antisense
TTACGGGAGCTTCGAAGACTTCGTT 496 35 991 Antisense
CGAAGACTTCGTTGGGAAGCTCCAA 519 251 1003 Antisense
GAAGGGATCGAGCAAAACACGCGCG 630 333 1132 Antisense
AAAGCTCCAAGCAATTTCGGAAACA 500 123 1219 Antisense
ATCCCTGATGATATTTTCCACGACG 433 37 1292 Antisense
CCACGACGGTCTTCGGGCAGATATG 572 271 1309 Antisense
CGGGCAGATATGTTCGAACCACCAT 65 245 1322 Antisense
Sequence Source Affymetrix Proprietary Database