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[173597_s_at]

Description C59084_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07E3.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C59084 /WB_GENE_ID=T07E3.7 /WP=CE01388 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387d11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 57      4grp_high_8_8 > 07      6grp_total > 55      4grp_total > 31      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 146.5
(3)
P 		134.3
(1.4)
A 		128.2
(0.6)
M 		99.9
(-3)
M 		47
B 163.6
(1.6)
A 		108.8
(-3)
P 		160
(1.3)
P 		180.7
(3)
P 		72
C 135.9
(2.4)
P 		137.9
(3)
P 		119.2
(-3)
P 		135.2
(2.1)
P 		19
avr 148.7
(3) 		127
(-3) 		135.8
(-0.6) 		138.6
(0.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 150.4
(0.2)
P 		129.4
(-1.3)
P 		189.8
(3)
A 		106
(-3)
P 		119.7
(-2)
P 		146.9
(-0.1)
P 		84
B 138.6
(-3)
P 		202
(3)
P 		188.2
(1.7)
P 		164.9
(-0.5)
A 		175.2
(0.5)
P 		195.5
(2.4)
M 		63
C 199.2
(0.8)
P 		123.7
(-3)
P 		150.9
(-1.6)
P 		134.2
(-2.5)
P 		153.2
(-1.5)
P 		241.9
(3)
P 		118
avr 162.7
(-0.2) 		151.7
(-1.3) 		176.3
(1.1) 		135
(-3) 		149.4
(-1.6) 		194.8
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 53.3
(3)
P 		29.2
(-0.7)
A 		33.5
(-0.1)
M 		14.6
(-3)
M 		39
B 52.2
(3)
A 		26.9
(-3)
P 		37.1
(-0.6)
P 		38.5
(-0.2)
P 		25
C 45
(3)
P 		39.6
(1.5)
P 		41.5
(2.1)
P 		22.8
(-3)
P 		22
avr 50.2
(3) 		31.9
(-1.4) 		37.4
(-0.1) 		25.3
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 27.7
(-2.7)
P 		46
(3)
P 		41.3
(1.5)
A 		26.9
(-3)
P 		36.1
(-0.1)
P 		35.8
(-0.2)
P 		19
B 48.2
(-2.1)
P 		67.2
(1.8)
P 		45.7
(-2.6)
P 		43.7
(-3)
A 		71.2
(2.7)
P 		72.9
(3)
M 		29
C 73.8
(2.2)
P 		37.7
(-1.8)
P 		38.4
(-1.7)
P 		27
(-3)
P 		49.6
(-0.5)
P 		81
(3)
P 		54
avr 49.9
(0.4) 		50.3
(0.5) 		41.8
(-1.2) 		32.5
(-3) 		52.3
(0.9) 		63.2
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173597_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24346
Sequence Type Exemplar sequence
Representative Public ID C59084 NCBI
Target Description C59084_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07E3.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C59084 /WB_GENE_ID=T07E3.7 /WP=CE01388 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171178(11), NM_171879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171178 NCBI Caenorhabditis elegans F57B9.7a (F57B9.7) mRNA, complete cds. 11/11 A 
NM_171879 NCBI Caenorhabditis elegans F57B9.7b (F57B9.7) mRNA, complete cds. 11/11 A 
SNAP00000019895 ENSEMBL cdna:SNAP chromosome:CEL140:III:6924309:6928741:-1 11/11 None
GENEFINDER00000019909 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6924309:6928741:-1 11/11 None
F57B9.7a ENSEMBL cdna:known chromosome:CEL140:III:6924042:6928741:-1 gene:F57B9.7 11/11 A 
F57B9.7b ENSEMBL cdna:known chromosome:CEL140:III:6924309:6928746:-1 gene:F57B9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6924100-6925399(-) 100.0 100.0
Public Domain and Genome References
Ensembl F57B9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM48538 Hypothetical protein F57B9.7a [Caenorhabditis elegans] ref|NP_741207.1| F57B9.7a [Caenorhabditis elegans] 0.0
blast AAM48539 Hypothetical protein F57B9.7b [Caenorhabditis elegans] ref|NP_741208.1| F57B9.7b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173597_S_AT
ggaacagacaatttacacgcaacgacatgctcgtaatgcacgagattcggcaaatgtgat
tccaaatcaaggagttgatgatgttaacgaagatgccgccaaacagctcgccgagatgaa
gctgaaaatgcaggatctggaacgagaaaatacaaatcaacaaggaaaggtgatcagaat
ggaggggcaaatgaagcggtacaaatcaaatgcagatgtagctgaaaaagaattggacga
gttaaaaactcaaatgagacaaacaaagaaagagcttcgagacaaagaaaacgcgttaga
cgagcaaaaagaaaccaataagcatctccaaagtcggctggaaaaaatgagaatgcaaag
aaccggtcgccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAGACAATTTACACGCAACGA 468 529 37 Antisense
AATTTACACGCAACGACATGCTCGT 407 175 46 Antisense
GCAACGACATGCTCGTAATGCACGA 262 321 55 Antisense
GAGATTCGGCAAATGTGATTCCAAA 552 397 78 Antisense
AAACAGCTCGCCGAGATGAAGCTGA 374 129 137 Antisense
ATGGAGGGGCAAATGAAGCGGTACA 40 53 215 Antisense
GAAGCGGTACAAATCAAATGCAGAT 102 343 229 Antisense
GAGCTTCGAGACAAAGAAAACGCGT 649 387 308 Antisense
GAAACCAATAAGCATCTCCAAAGTC 37 357 347 Antisense
AAGCATCTCCAAAGTCGGCTGGAAA 479 151 356 Antisense
GAGAATGCAAAGAACCGGTCGCCCA 293 391 385 Antisense
Sequence Source Affymetrix Proprietary Database