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[173596_at]

Description C59084_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07E3.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C59084 /WB_GENE_ID=T07E3.7 /WP=CE01388 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 67      4grp_highest_8_8 > 62      4grp_high_8_8 > 27      6grp_highest_nonorm > 87      6grp_total > 58      4grp_total > 37      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 1023.7
(3)
P 		624.4
(-1.8)
P 		528.7
(-3)
P 		814.4
(0.5)
P 		495
B 719.9
(-0.5)
P 		1010.7
(3)
P 		507.5
(-3)
P 		969.3
(2.5)
P 		503
C 1094.5
(3)
P 		941.1
(0.1)
P 		970.4
(0.7)
P 		772.5
(-3)
P 		322
avr 946
(3) 		858.7
(1.1) 		668.9
(-3) 		852.1
(1) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 723
1 2 3 4 5 6 range
A 989.9
(-0.8)
P 		1001.9
(-0.6)
P 		829.7
(-3)
P 		843.8
(-2.8)
P 		1265.8
(3)
P 		1133.4
(1.2)
P 		436
B 1152
(2.2)
P 		1000.2
(0.1)
P 		771.6
(-3)
P 		1120.8
(1.8)
P 		969
(-0.3)
P 		1209.8
(3)
P 		438
C 1174.3
(-0)
P 		1130.4
(-0.4)
P 		1024.3
(-1.4)
P 		1452.8
(2.6)
P 		856.4
(-3)
P 		1494.3
(3)
P 		638
avr 1105.4
(0.4) 		1044.2
(-0.5) 		875.2
(-3) 		1139.1
(0.9) 		1030.4
(-0.7) 		1279.2
(3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 372.7
(3)
P 		135.5
(-2.6)
P 		138.2
(-2.6)
P 		119.2
(-3)
P 		254
B 229.6
(2.1)
P 		249.6
(3)
P 		117.6
(-3)
P 		206.6
(1)
P 		132
C 362.3
(3)
P 		270.6
(0.6)
P 		338.2
(2.4)
P 		130.2
(-3)
P 		232
avr 321.5
(3) 		218.6
(-0.6) 		198
(-1.4) 		152
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 182.5
(-2.9)
P 		356.3
(2.2)
P 		180.7
(-3)
P 		214
(-2)
P 		382
(3)
P 		275.9
(-0.2)
P 		201
B 400.8
(1.9)
P 		332.9
(0.3)
P 		187.4
(-3)
P 		296.9
(-0.5)
P 		393.7
(1.7)
P 		451.1
(3)
P 		264
C 435.2
(1.4)
P 		344.9
(-0.9)
P 		260.7
(-3)
P 		292.2
(-2.2)
P 		277.1
(-2.6)
P 		500.2
(3)
P 		240
avr 339.5
(0.9) 		344.7
(1.1) 		209.6
(-3) 		267.7
(-1.3) 		350.9
(1.2) 		409.1
(3) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24346
Sequence Type Exemplar sequence
Representative Public ID C59084 NCBI
Target Description C59084_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07E3.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C59084 /WB_GENE_ID=T07E3.7 /WP=CE01388 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171178 NCBI Caenorhabditis elegans F57B9.7a (F57B9.7) mRNA, complete cds. 11/11 None
F57B9.7a ENSEMBL cdna:known chromosome:CEL140:III:6924042:6928741:-1 gene:F57B9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175964 2 1 NM_171178 173596_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6924100-6925399(-) 100.0 100.0
Public Domain and Genome References
Ensembl F57B9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM48538 Hypothetical protein F57B9.7a [Caenorhabditis elegans] ref|NP_741207.1| F57B9.7a [Caenorhabditis elegans] 0.0
blast AAM48539 Hypothetical protein F57B9.7b [Caenorhabditis elegans] ref|NP_741208.1| F57B9.7b [Caenorhabditis elegans] 0.0
blast CAE70045 Hypothetical protein CBG16477 [Caenorhabditis briggsae] 7.0E-84
Sequence
Target Sequence 
>C. ELEGANS:173596_AT
ggtcgcccattataggatttgtgccagttaatttttttcatcattttttaatattttccc
ccacaaggtgctttattcgtattgccattatcacccatcctaaaattttttagacataat
ttttctgttctcagtattctttttttttcaccataatttcttccctgtatgttcatgttt
ttagtgccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGCCCATTATAGGATTTGTGCC 215 501 401 Antisense
TGTGCCAGTTAATTTTTTTCATCAT 235 557 420 Antisense
TAATATTTTCCCCCACAAGGTGCTT 80 635 449 Antisense
TTCCCCCACAAGGTGCTTTATTCGT 68 697 456 Antisense
GTGCTTTATTCGTATTGCCATTATC 694 479 468 Antisense
ATTCGTATTGCCATTATCACCCATC 4 11 475 Antisense
CATTATCACCCATCCTAAAATTTTT 379 215 486 Antisense
TAGACATAATTTTTCTGTTCTCAGT 472 651 511 Antisense
TTTTCACCATAATTTCTTCCCTGTA 22 677 545 Antisense
ATTTCTTCCCTGTATGTTCATGTTT 172 17 556 Antisense
GTATGTTCATGTTTTTAGTGCCTTT 683 455 567 Antisense
Sequence Source Affymetrix Proprietary Database