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[173593_at]

Description CEK092B6F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK546.13 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69792 /WB_GENE_ID=ZK546.13 /WP=CE02913 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk92b6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_highest_8_8 > 24      4grp_high_8_8 > 60      6grp_highest_nonorm > 74      6grp_total > 95      4grp_total > 60      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 924.6
(3)
P 		659.4
(-2.5)
P 		900.4
(2.5)
P 		635.7
(-3)
P 		289
B 867.1
(-1)
P 		1009
(3)
P 		937.3
(1)
P 		794.5
(-3)
P 		215
C 914.6
(-0.3)
P 		1086.5
(3)
P 		939.5
(0.1)
P 		778
(-3)
P 		309
avr 902.1
(2.3) 		918.3
(2.8) 		925.7
(3) 		736.1
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 551.5
(-2)
P 		483.3
(-3)
P 		873.8
(3)
P 		549.5
(-2)
P 		733.9
(0.9)
P 		553.2
(-1.9)
P 		391
B 687.6
(-1.3)
P 		590.7
(-3)
P 		693.3
(-1.3)
P 		942.9
(3)
P 		853.4
(1.5)
P 		920.2
(2.6)
P 		352
C 675.1
(0.5)
P 		427.4
(-3)
P 		530
(-1.6)
P 		599.3
(-0.6)
P 		757.3
(1.6)
P 		855.6
(3)
P 		428
avr 638.1
(-0.1) 		500.5
(-3) 		699
(1.2) 		697.2
(1.2) 		781.5
(3) 		776.3
(2.9) 		281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 336.6
(3)
P 		143.1
(-1.8)
P 		235.4
(0.5)
P 		93.1
(-3)
P 		244
B 276.5
(3)
P 		249.2
(1.5)
P 		217.2
(-0.3)
P 		169.3
(-3)
P 		107
C 302.8
(2.2)
P 		312.4
(2.5)
P 		327.5
(3)
P 		131.2
(-3)
P 		196
avr 305.3
(3) 		234.9
(0.6) 		260
(1.4) 		131.2
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 101.7
(-3)
P 		171.9
(0.5)
P 		190.3
(1.4)
P 		139.4
(-1.1)
P 		221.5
(3)
P 		134.7
(-1.3)
P 		120
B 239.2
(-0.6)
P 		196.6
(-2.1)
P 		168.4
(-3)
P 		249.7
(-0.3)
P 		346.7
(3)
P 		343.1
(2.9)
P 		178
C 250.2
(1.7)
P 		130.4
(-2.6)
P 		134.9
(-2.5)
P 		120.5
(-3)
P 		245.1
(1.5)
P 		286.4
(3)
P 		166
avr 197
(-1.2) 		166.3
(-2.9) 		164.5
(-3) 		169.9
(-2.7) 		271.1
(3) 		254.7
(2.1) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23555
Sequence Type Exemplar sequence
Representative Public ID CEK092B6F NCBI
Target Description CEK092B6F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK546.13 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69792 /WB_GENE_ID=ZK546.13 /WP=CE02913 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk92b6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027353 NCBI Caenorhabditis elegans ZK546.17 (ZK546.17) mRNA, complete cds. 11/11 None
ZK546.17.1 ENSEMBL cdna:known chromosome:CEL140:II:4938593:4941135:-1 gene:ZK546.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4938601-4943926(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK546.17
Entrez Gene 3565644 Entrez gene
SwissProt Q7Z144 EMBL-EBI
WormBase CE34461 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585086_AT similar to ZK546.17 cfa
CANINE_2:CFA.8997.1.A1_AT similar to ZK546.17 cfa
CANINE_2:CFAAFFX.7811.1.S1_AT similar to ZK546.17 cfa
CANINE_2:CFAAFFX.7811.1.S1_S_AT similar to ZK546.17 cfa
CHICKEN:GGAAFFX.6446.1.S1_S_AT similar to RIKEN cDNA 1810037K07 gga
HG-U133_PLUS_2:211774_S_AT DKFZp564I122 protein hs
HG-U133A:211774_S_AT DKFZp564I122 protein hs
HG-U133A_2:211774_S_AT DKFZp564I122 protein hs
HU35KSUBA:RC_AA620830_AT DKFZp564I122 protein hs
U133_X3P:G13543966_3P_S_AT DKFZp564I122 protein hs
HG-U95AV2:37832_AT DKFZp564I122 protein hs
MOUSE430_2:1418915_AT RIKEN cDNA 1810037K07 gene mm
MOUSE430A_2:1418915_AT RIKEN cDNA 1810037K07 gene mm
MOE430A:1418915_AT RIKEN cDNA 1810037K07 gene mm
MU19KSUBA:TC24992_AT RIKEN cDNA 1810037K07 gene (1810037K07Rik), mRNA mm
MU19KSUBA:TC24992_G_AT RIKEN cDNA 1810037K07 gene (1810037K07Rik), mRNA mm
RAE230A:1376214_AT Similar to RIKEN cDNA 1810037K07 (predicted) rn
RAT230_2:1376214_AT Similar to RIKEN cDNA 1810037K07 (predicted) rn
RG-U34B:RC_AA850788_AT Similar to RIKEN cDNA 1810037K07 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAP68926 Hypothetical protein ZK546.17 [Caenorhabditis elegans] ref|NP_001022524.1| ZK546.17 [Caenorhabditis elegans] 1.0E-160
blast CAE59006 Hypothetical protein CBG02282 [Caenorhabditis briggsae] 1.0E-129
blast CAG31572 hypothetical protein [Gallus gallus] ref|NP_001026452.1| hypothetical protein LOC424597 [Gallus gallus] 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:173593_AT
gattttatctgattttttagccataatttttataggtgctgtgttatattagtttaatag
aatctattattagttaagccctacccttattgccatttcttcaattgatgagcagctttg
tattatgccatttcacacgaatctacacattacccacgggatattttattgtcgaattct
atcttattatcgctcaatttccagcgaaagccttggttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTATCTGATTTTTTAGCCATA 536 429 1847 Antisense
ATAGGTGCTGTGTTATATTAGTTTA 121 23 1878 Antisense
TATTAGTTAAGCCCTACCCTTATTG 704 657 1914 Antisense
TTGCCATTTCTTCAATTGATGAGCA 576 701 1936 Antisense
GAGCAGCTTTGTATTATGCCATTTC 564 389 1956 Antisense
ATGCCATTTCACACGAATCTACACA 287 41 1971 Antisense
AATCTACACATTACCCACGGGATAT 557 169 1986 Antisense
TACCCACGGGATATTTTATTGTCGA 338 647 1997 Antisense
TGTCGAATTCTATCTTATTATCGCT 177 557 2016 Antisense
TATCTTATTATCGCTCAATTTCCAG 515 659 2026 Antisense
ATTTCCAGCGAAAGCCTTGGTTGTG 442 15 2043 Antisense
Sequence Source Affymetrix Proprietary Database