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[173589_at]

Description C62630 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y105C5A.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C62630 /WB_GENE_ID=Y105C5A.1 /WP=CE23184 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk288f10 : 5prime end, single read.
Cluster 6grp_total > 39      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 93.6
(3)
A 		7.6
(-3)
A 		35.7
(-1)
A 		93.2
(3)
A 		86
B 96.2
(3)
P 		49.3
(-2.7)
A 		47.2
(-3)
A 		47.8
(-2.9)
A 		49
C 95.3
(3)
P 		73.9
(-0.1)
A 		73
(-0.2)
A 		53.3
(-3)
A 		42
avr 95
(3) 		43.6
(-3) 		52
(-2) 		64.8
(-0.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 106
(1.6)
A 		111.7
(2.1)
P 		48.3
(-3)
A 		59.4
(-2.1)
P 		123.5
(3)
P 		90
(0.3)
A 		75
B 97.8
(0.8)
A 		81.7
(-0.4)
A 		47.3
(-3)
A 		96
(0.7)
A 		56
(-2.3)
M 		126.9
(3)
A 		80
C 151.1
(3)
P 		87.5
(-0.7)
A 		111.5
(0.7)
A 		47.2
(-3)
A 		121.8
(1.3)
P 		90.3
(-0.5)
P 		104
avr 118.3
(3) 		93.6
(0.1) 		69
(-2.8) 		67.5
(-3) 		100.4
(0.9) 		102.4
(1.1) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 34.1
(3)
A 		1.7
(-3)
A 		9.3
(-1.6)
A 		13.6
(-0.8)
A 		32
B 30.7
(3)
P 		12.2
(-2.4)
A 		10.9
(-2.8)
A 		10.2
(-3)
A 		21
C 31.5
(3)
P 		21.3
(0.3)
A 		25.5
(1.4)
A 		9
(-3)
A 		23
avr 32.1
(3) 		11.7
(-2.8) 		15.2
(-1.8) 		10.9
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.5
(-1.2)
A 		39.7
(3)
P 		10.5
(-3)
A 		15.1
(-2.1)
P 		37.3
(2.5)
P 		21.9
(-0.7)
A 		29
B 34
(0.8)
A 		27.2
(-0.4)
A 		11.5
(-3)
A 		25.4
(-0.7)
A 		22.8
(-1.1)
M 		47.3
(3)
A 		36
C 56
(3)
P 		26.7
(-0.8)
A 		28.4
(-0.6)
A 		9.5
(-3)
A 		39.4
(0.9)
P 		30.2
(-0.3)
P 		47
avr 36.5
(3) 		31.2
(1.4) 		16.8
(-3) 		16.7
(-3) 		33.2
(2) 		33.1
(2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173589_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24559
Sequence Type Exemplar sequence
Representative Public ID C62630 NCBI
Target Description C62630 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y105C5A.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C62630 /WB_GENE_ID=Y105C5A.1 /WP=CE23184 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk288f10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070470 NCBI Caenorhabditis elegans Y105C5A.1 (Y105C5A.1) mRNA, complete cds. 11/11 A 
Y105C5A.1 ENSEMBL cdna:known chromosome:CEL140:IV:15550838:15554682:-1 gene:Y105C5A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15550854-15554678(-) 98.93 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.1
Entrez Gene 178439 Entrez gene
SwissProt Q9NF71 EMBL-EBI
WormBase CE23184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54981 Hypothetical protein Y105C5A.1 [Caenorhabditis elegans] ref|NP_502871.1| Y105C5A.1 [Caenorhabditis elegans] 0.0
blast CAE68077 Hypothetical protein CBG13707 [Caenorhabditis briggsae] 1.0E-93
blast CAE73983 Hypothetical protein CBG21614 [Caenorhabditis briggsae] 1.0E-71
Sequence
Target Sequence 
>C. ELEGANS:173589_AT
tagagttgtacattttcatttttccccgattaaatttataatttcatgctcaggtactca
agcttttccccatactttttcccattccacaccccctgctttacaatatccatcacactt
tttctggtaatttttttttctaaaattcaatattttcggtttcctcccatcccccacacg
tgacacttttatacttgttctatctgatttttttgctcatttttttaaaagtaattgcga
ttgtttaatttaaatattgcttcattcttaaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGAGTTGTACATTTTCATTTTTCC 181 653 2315 Antisense
AATTTATAATTTCATGCTCAGGTAC 205 165 2347 Antisense
ATGCTCAGGTACTCAAGCTTTTCCC 218 43 2360 Antisense
CCCCTGCTTTACAATATCCATCACA 448 261 2407 Antisense
TTACAATATCCATCACACTTTTTCT 110 685 2415 Antisense
AATATCCATCACACTTTTTCTGGTA 686 173 2419 Antisense
CCATCACACTTTTTCTGGTAATTTT 366 271 2424 Antisense
TCCCCCACACGTGACACTTTTATAC 193 597 2484 Antisense
GTGACACTTTTATACTTGTTCTATC 629 481 2494 Antisense
TTGTTCTATCTGATTTTTTTGCTCA 378 705 2509 Antisense
AAATATTGCTTCATTCTTAAAAATT 627 115 2566 Antisense
Sequence Source Affymetrix Proprietary Database