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[173588_s_at]

Description CEK001HZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T13F2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32680 /WB_GENE_ID=T13F2.6 /WP=CE13629 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1h12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 42      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 73.3
(-3)
A 		104.5
(1.9)
P 		111.3
(3)
P 		101
(1.4)
M 		38
B 54.2
(-3)
A 		109.8
(3)
P 		82.6
(0.1)
A 		70.2
(-1.3)
A 		56
C 62.7
(-3)
A 		94.3
(3)
A 		66.7
(-2.2)
P 		70.1
(-1.6)
P 		32
avr 63.4
(-3) 		102.9
(3) 		86.9
(0.6) 		80.4
(-0.4) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 65.3
(-2.9)
A 		100.6
(-2.3)
P 		56.5
(-3)
A 		106.6
(-2.2)
P 		171.8
(-1.2)
P 		445.5
(3)
P 		389
B 62.5
(-3)
M 		79
(-2.7)
A 		100.1
(-2.3)
P 		117.4
(-1.9)
P 		191.6
(-0.5)
P 		370.9
(3)
P 		308
C 65.8
(-3)
P 		77.1
(-2.7)
A 		93.9
(-2.4)
P 		117.7
(-1.8)
P 		213.7
(0.3)
P 		333.2
(3)
P 		267
avr 64.5
(-3) 		85.6
(-2.6) 		83.5
(-2.6) 		113.9
(-2.1) 		192.4
(-0.6) 		383.2
(3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 26.7
(2)
A 		22.7
(0.3)
P 		29.1
(3)
P 		14.8
(-3)
M 		14
B 17.3
(-1.9)
A 		27.1
(3)
P 		19.1
(-1)
A 		15
(-3)
A 		12
C 20.8
(0.5)
A 		27.1
(3)
A 		23.2
(1.5)
P 		11.8
(-3)
P 		15
avr 21.6
(0.9) 		25.6
(3) 		23.8
(2.1) 		13.9
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 12
(-3)
A 		35.8
(-1.5)
P 		12.3
(-3)
A 		27
(-2.1)
P 		51.8
(-0.5)
P 		108.5
(3)
P 		97
B 21.7
(-3)
M 		26.3
(-2.8)
A 		24.3
(-2.9)
P 		31.1
(-2.5)
P 		77.9
(-0.1)
P 		138.3
(3)
P 		117
C 24.4
(-2.9)
P 		23.5
(-3)
A 		23.9
(-3)
P 		23.7
(-3)
P 		69.1
(0.1)
P 		111.5
(3)
P 		88
avr 19.4
(-3) 		28.5
(-2.5) 		20.2
(-3) 		27.3
(-2.5) 		66.3
(-0.2) 		119.4
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173588_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24610
Sequence Type Exemplar sequence
Representative Public ID CEK001HZR NCBI
Target Description CEK001HZR_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T13F2.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32680 /WB_GENE_ID=T13F2.6 /WP=CE13629 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk1h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069344 NCBI Caenorhabditis elegans T13F2.6 (T13F2.6) mRNA, complete cds. 11/11 None
SNAP00000043478 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9778359:9780525:1 11/11 None
GENEFINDER00000043483 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9777713:9780525:1 11/11 None
T13F2.6 ENSEMBL cdna:known chromosome:CEL140:IV:9778262:9781118:1 gene:T13F2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9778365-9780532(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13F2.6
Entrez Gene 177817 Entrez gene
SwissProt Q94049 EMBL-EBI
WormBase CE13629 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03357 Hypothetical protein T13F2.6 [Caenorhabditis elegans] ref|NP_501745.1| T13F2.6 [Caenorhabditis elegans] 0.0
blast CAE69015 Hypothetical protein CBG15012 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173588_S_AT
agtgcacactctatcaacttggctacaatgggtgttagtgatatatcgctgaacgaagac
ggaatatgtgagcaagagcaacgaccaagaagacgattactctcattctctagatttgga
agctcggcgcagggctgctgccttccacgtaccgactcactcgacaaggttggcctctac
gatgctctcgtcagaaatgaaaagacaagcatttcgagtacgaccagctcagcaactgtc
aaaacttttccaaaagccaatactccattgggaactaaacgacttaattattcacgatca
gtttcgatgtctaataaggcaatcgaattggatgatgatctaatgtggagacatcatgac
acatcagttctcaaaatcgtcgaagatgaagatgaatccgttcttcctaaactaagcctc
agcgtag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCACACTCTATCAACTTGGCTA 132 61 1296 Antisense
GAAGACGATTACTCTCATTCTCTAG 315 339 1384 Antisense
CTCTAGATTTGGAAGCTCGGCGCAG 32 215 1403 Antisense
CGTACCGACTCACTCGACAAGGTTG 169 247 1443 Antisense
ACTCGACAAGGTTGGCCTCTACGAT 465 97 1454 Antisense
CCTCTACGATGCTCTCGTCAGAAAT 42 269 1469 Antisense
GCATTTCGAGTACGACCAGCTCAGC 532 307 1504 Antisense
GCTCAGCAACTGTCAAAACTTTTCC 168 301 1522 Antisense
GACATCATGACACATCAGTTCTCAA 613 369 1645 Antisense
AGATGAATCCGTTCTTCCTAAACTA 357 67 1685 Antisense
CTTCCTAAACTAAGCCTCAGCGTAG 443 215 1698 Antisense
Sequence Source Affymetrix Proprietary Database