[Home] | [Total List]

[173587_s_at]

Description CEK061GZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07D10.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D73666 /WB_GENE_ID=T07D10.1 /WP=CE21161 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk61g12 : 5prime end, single read.
Cluster 6grp_total > 15      4grp_total > 29      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 46.1
(0.9)
A 		16.1
(-1.9)
A 		5
(-3)
A 		68.3
(3)
A 		63
B 42
(3)
A 		34.8
(1.8)
A 		5.7
(-3)
A 		34.4
(1.7)
A 		36
C 31.3
(3)
A 		24.6
(1.6)
A 		3.4
(-3)
A 		4.5
(-2.8)
A 		28
avr 39.8
(3) 		25.2
(0.5) 		4.7
(-3) 		35.7
(2.3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 97
(3)
A 		37.1
(-1.5)
A 		23.6
(-2.5)
A 		37
(-1.5)
A 		16.9
(-3)
A 		29.7
(-2)
A 		80
B 19.2
(-1.3)
A 		65
(3)
A 		31.2
(-0.2)
A 		13.3
(-1.9)
A 		1.5
(-3)
A 		4.2
(-2.7)
A 		64
C 66.9
(3)
A 		40.9
(0.3)
A 		15.8
(-2.4)
A 		13.8
(-2.6)
A 		9.6
(-3)
A 		10.9
(-2.9)
A 		57
avr 61
(3) 		47.7
(1.5) 		23.5
(-1.4) 		21.4
(-1.6) 		9.3
(-3) 		14.9
(-2.4) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.8
(3)
A 		3.5
(-2.1)
A 		1.3
(-3)
A 		10
(0.4)
A 		16
B 13.4
(3)
A 		8.6
(0.6)
A 		1.3
(-3)
A 		7.3
(-0)
A 		12
C 10.4
(3)
A 		7.1
(0.9)
A 		1.2
(-2.8)
A 		0.8
(-3)
A 		10
avr 13.5
(3) 		6.4
(-0.5) 		1.3
(-3) 		6
(-0.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 17.9
(3)
A 		13.2
(0.8)
A 		5.1
(-3)
A 		9.4
(-1)
A 		5.1
(-3)
A 		7.2
(-2)
A 		13
B 6.7
(-1.3)
A 		21.6
(3)
A 		7.6
(-1)
A 		3.5
(-2.2)
A 		0.6
(-3)
A 		1.6
(-2.7)
A 		21
C 24.8
(3)
A 		12.5
(-0.4)
A 		4
(-2.7)
A 		2.8
(-3)
A 		3.1
(-2.9)
A 		3.6
(-2.8)
A 		22
avr 16.5
(3) 		15.8
(2.7) 		5.6
(-1.8) 		5.2
(-2) 		2.9
(-3) 		4.1
(-2.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173587_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22587
Sequence Type Exemplar sequence
Representative Public ID CEK061GZF NCBI
Target Description CEK061GZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07D10.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D73666 /WB_GENE_ID=T07D10.1 /WP=CE21161 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk61g12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060791 NCBI Caenorhabditis elegans T07D10.1 (T07D10.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000024107 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12610019:12614368:-1 11/11 None
SNAP00000024086 ENSEMBL cdna:SNAP chromosome:CEL140:I:12612006:12614368:-1 11/11 None
T07D10.1 ENSEMBL cdna:known chromosome:CEL140:I:12611893:12614369:-1 gene:T07D10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12611834-12614300(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D10.1
Entrez Gene 173130 Entrez gene
SwissProt O45765 EMBL-EBI
WormBase CE21161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04716 Hypothetical protein T07D10.1 [Caenorhabditis elegans] ref|NP_493192.1| T07D10.1 [Caenorhabditis elegans] 1.0E-118
blast CAB04716 Hypothetical protein T07D10.1 [Caenorhabditis elegans] ref|NP_493192.1| T07D10.1 [Caenorhabditis elegans] 1.0E-117
blast CAE64121 Hypothetical protein CBG08735 [Caenorhabditis briggsae] 6.0E-69
blast CAE64121 Hypothetical protein CBG08735 [Caenorhabditis briggsae] 3.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493192.1 1 9-31
T07D10.1 1 9-31
GENEFINDER00000024107 2 4-26,385-407
SNAP00000024086 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:173587_S_AT
gtttccacgaatttcagtgcaccccgccggcgccctactgtccgtgtccgacaatactct
cggagttccattacacatataagatggtctcggcacgagttcaggcaacgttttaccata
acaggcggtgcacttgcctggcggggatctgcatttacctacgaatacccaatgagccgt
ggtactttggagacctgccggatgaacttatttttgacctgattggacccggtgtcaagc
gatttatctcgccacgtggcagacgacgtcactcgccgttactcctgccaccggtaccat
cagctccagaaatgacgtcatcatcagaagaggaattggagcccgatgacgtggcaacgc
cagaagaccctcccgcttatgctaccgtattcggttatacaagaactgacctaatttcta
gaattgatgaaattcccccgccaaattattattcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCCACGAATTTCAGTGCACCCC 539 449 378 Antisense
GTCCGTGTCCGACAATACTCTCGGA 686 473 417 Antisense
GATGGTCTCGGCACGAGTTCAGGCA 122 409 460 Antisense
TAACAGGCGGTGCACTTGCCTGGCG 397 637 496 Antisense
GGATCTGCATTTACCTACGAATACC 452 511 522 Antisense
GTACTTTGGAGACCTGCCGGATGAA 680 457 559 Antisense
TTTTGACCTGATTGGACCCGGTGTC 106 673 589 Antisense
GACCCGGTGTCAAGCGATTTATCTC 87 383 603 Antisense
TTGGAGCCCGATGACGTGGCAACGC 191 709 713 Antisense
TCCCGCTTATGCTACCGTATTCGGT 587 597 748 Antisense
ATTCCCCCGCCAAATTATTATTCAT 317 7 809 Antisense
Sequence Source Affymetrix Proprietary Database