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[173584_s_at]

Description CEK013C5R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W01C9.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27548 /WB_GENE_ID=W01C9.3 /WP=CE02369 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk13c5 : 3prime end, single read.
Cluster 6grp_total > 59      4grp_total > 25      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 44.9
(-3)
A 		105.4
(0.6)
A 		67.1
(-1.7)
A 		147
(3)
P 		102
B 43.3
(-3)
A 		57.3
(-1.7)
A 		80.1
(0.5)
A 		106.9
(3)
A 		64
C 31.2
(-3)
A 		87.5
(3)
A 		79.9
(2.2)
A 		70.7
(1.2)
A 		56
avr 39.8
(-3) 		83.4
(0.8) 		75.7
(0.1) 		108.2
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 97.2
(-2.2)
P 		106.1
(-1.5)
A 		85
(-3)
A 		171.1
(2.9)
M 		152.2
(1.6)
P 		172.1
(3)
P 		87
B 228.2
(2.2)
P 		103.6
(-1.2)
P 		39.4
(-3)
A 		91.4
(-1.6)
A 		141.1
(-0.2)
P 		255.9
(3)
P 		217
C 138
(-1.7)
P 		103.4
(-2.8)
P 		95
(-3)
A 		135.2
(-1.8)
P 		129.6
(-2)
P 		297.3
(3)
P 		202
avr 154.5
(-0.1) 		104.4
(-1.9) 		73.1
(-3) 		132.6
(-0.9) 		141
(-0.6) 		241.8
(3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.3
(-3)
A 		22.9
(3)
A 		17.5
(-1.9)
A 		21.5
(1.7)
P 		7
B 13.8
(-3)
A 		14.2
(-2.7)
A 		18.6
(0.2)
A 		22.8
(3)
A 		9
C 10.3
(-3)
A 		25.1
(2.1)
A 		27.8
(3)
A 		11.9
(-2.5)
A 		18
avr 13.5
(-3) 		20.7
(2.5) 		21.3
(3) 		18.7
(1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 17.9
(-3)
P 		37.7
(1.2)
A 		18.5
(-2.9)
A 		43.4
(2.5)
M 		45.9
(3)
P 		41.9
(2.1)
P 		28
B 79.4
(1.9)
P 		34.5
(-1.3)
P 		9.6
(-3)
A 		24.2
(-2)
A 		57.3
(0.3)
P 		95.4
(3)
P 		86
C 51.2
(-0.8)
P 		31.6
(-2.4)
P 		24.2
(-3)
A 		27.2
(-2.8)
P 		41.9
(-1.6)
P 		99.5
(3)
P 		75
avr 49.5
(0.1) 		34.6
(-1.3) 		17.4
(-3) 		31.6
(-1.6) 		48.4
(0) 		78.9
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173584_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23186
Sequence Type Exemplar sequence
Representative Public ID CEK013C5R NCBI
Target Description CEK013C5R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W01C9.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27548 /WB_GENE_ID=W01C9.3 /WP=CE02369 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk13c5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063403 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-73) (pqn-73) mRNA, complete cds. 11/11 None
SNAP00000001840 ENSEMBL cdna:SNAP chromosome:CEL140:II:8541689:8544994:1 11/11 None
GENEFINDER00000001844 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8540642:8544994:1 11/11 None
W01C9.3 ENSEMBL cdna:known chromosome:CEL140:II:8541202:8545374:1 gene:W01C9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8541199-8544992(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-73
Ensembl W01C9.3
Entrez Gene 174366 Entrez gene
SwissProt Q23115 EMBL-EBI
WormBase CE02369 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90267 Hypothetical protein W01C9.3 [Caenorhabditis elegans] ref|NP_495804.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-73) [Caenorhabditis elegans] 0.0
blast CAE57593 Hypothetical protein CBG00574 [Caenorhabditis briggsae] 0.0
blast CAE69216 Hypothetical protein CBG15256 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495804.1 1 190-212
W01C9.3 1 190-212
SNAP00000001840 1 182-204
GENEFINDER00000001844 1 230-252
Sequence
Target Sequence 
>C. ELEGANS:173584_S_AT
gaacggattcggtgcacaaccaagttatagaacttctcagttcggattcaataagaacga
tccaagaaaccaagttggtgggttgaatggaaatggtcttggtaacagtgttaatagtga
acatcagatatcagttagtgcacatacaaatgcaccgagaatcggaacggttctaaacga
gtttggaaatcccgtaaatgttaatccatcccagtcctctcaacaaaaccttcagcaaca
acagttgatgaatcagatgaatcaacaaattcctcaatatgctggaccagttgtcaaccc
aaattatatttcaacttctggagggctggcactagaaaaccgagacgctgatggtttctc
gcatcgacttcagcaattaatggggacttcatccaattaccgcccagatgttgaaccagt
caactacaatgttccaacatacagtcaaccgaaccgaccagatgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGGATTCGGTGCACAACCAAGT 456 331 1895 Antisense
TAAATGTTAATCCATCCCAGTCCTC 618 641 2089 Antisense
GTCCTCTCAACAAAACCTTCAGCAA 92 477 2108 Antisense
TATGCTGGACCAGTTGTCAACCCAA 36 657 2172 Antisense
TTCAACTTCTGGAGGGCTGGCACTA 17 685 2204 Antisense
GCTGGCACTAGAAAACCGAGACGCT 580 291 2219 Antisense
CGAGACGCTGATGGTTTCTCGCATC 658 249 2235 Antisense
TTCTCGCATCGACTTCAGCAATTAA 687 689 2250 Antisense
AATGGGGACTTCATCCAATTACCGC 302 163 2273 Antisense
CAATTACCGCCCAGATGTTGAACCA 335 177 2288 Antisense
AGTCAACCGAACCGACCAGATGCAT 627 59 2337 Antisense
Sequence Source Affymetrix Proprietary Database