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[173583_s_at]

Description CEK093BZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14H10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69868 /WB_GENE_ID=C14H10.2 /WP=CE23543 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk93b12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 60      6grp_highest_nonorm > 53      6grp_total > 61      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 565
1 2 3 4 range
A 568.4
(2.8)
P 		424.3
(0.9)
P 		586.7
(3)
P 		132.8
(-3)
A 		454
B 515.4
(1.2)
P 		649.7
(3)
P 		646.3
(3)
P 		211
(-3)
A 		439
C 497.8
(0.8)
P 		697.7
(3)
P 		584.2
(1.7)
P 		160.7
(-3)
A 		537
avr 527.2
(1.9) 		590.6
(2.8) 		605.7
(3) 		168.2
(-3) 		438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 911
1 2 3 4 5 6 range
A 444.1
(-1.9)
P 		937.5
(1.7)
P 		953.9
(1.8)
P 		1120
(3)
P 		733.6
(0.2)
P 		296.6
(-3)
P 		823
B 725.1
(0.7)
P 		717.9
(0.6)
P 		938.2
(3)
P 		921.7
(2.8)
P 		604.7
(-0.6)
P 		377.3
(-3)
P 		561
C 648.6
(-1.3)
P 		932.3
(0.9)
P 		802.7
(-0.1)
P 		1207.8
(3)
P 		711.2
(-0.8)
P 		431.4
(-3)
P 		776
avr 605.9
(-1) 		862.6
(1.1) 		898.3
(1.4) 		1083.2
(3) 		683.2
(-0.4) 		368.4
(-3) 		715
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 207
(3)
P 		92.1
(-0.7)
P 		153.4
(1.3)
P 		19.4
(-3)
A 		188
B 164.3
(3)
P 		160.5
(2.8)
P 		149.8
(2.3)
P 		45
(-3)
A 		119
C 164.8
(1.7)
P 		200.6
(2.9)
P 		203.6
(3)
P 		27.1
(-3)
A 		177
avr 178.7
(3) 		151.1
(1.9) 		168.9
(2.6) 		30.5
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 81.9
(-2.8)
P 		333.4
(3)
P 		207.7
(0.1)
P 		284.1
(1.9)
P 		221.4
(0.4)
P 		72.2
(-3)
P 		261
B 252.3
(3)
P 		239
(2.3)
P 		227.8
(1.7)
P 		244.1
(2.6)
P 		245.7
(2.6)
P 		140.7
(-3)
P 		112
C 240.4
(1.1)
P 		284.5
(3)
P 		204.3
(-0.4)
P 		242.9
(1.2)
P 		230.1
(0.7)
P 		144.4
(-3)
P 		140
avr 191.5
(-0.4) 		285.6
(3) 		213.3
(0.4) 		257
(2) 		232.4
(1.1) 		119.1
(-3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173583_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25929
Sequence Type Exemplar sequence
Representative Public ID CEK093BZF NCBI
Target Description CEK093BZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14H10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69868 /WB_GENE_ID=C14H10.2 /WP=CE23543 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk93b12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077320 NCBI Caenorhabditis elegans C14H10.2 (C14H10.2) mRNA, complete cds. 11/11 None
C14H10.2 ENSEMBL cdna:known chromosome:CEL140:X:10242261:10251283:-1 gene:C14H10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10242288-10251284(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14H10.2
Entrez Gene 181234 Entrez gene
SwissProt Q18350 EMBL-EBI
WormBase CE23543 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90738 Hypothetical protein C14H10.2 [Caenorhabditis elegans] emb|CAA89023.2| Hypothetical protein C14H10.2 [Caenorhabditis elegans] ref|NP_509721.1| C14H10.2 [Caenorhabditis elegans] 0.0
blast CAE70551 Hypothetical protein CBG17195 [Caenorhabditis briggsae] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 6.0E-21
Sequence
Target Sequence 
>C. ELEGANS:173583_S_AT
caatgctcatttggaacgtcagttccagtctcaatcagatattattgaagccttgaaaaa
gaagctgctccaacacagatcattttgtgataagatcaataagttgtcagaacttgaaga
tgctagcagaattcaggaagaactagtaatgttctcaagagagaataattgcgacgaagg
gaagattgctgcaaatatcgcactcataatcaaggatatccgcaagaacacattctactc
accattggaaatctccaccgcccatcataagattcgcccatacagctcggtagactcatc
tgcggagtggcagtcaaacagcagtgaaggtatcgtctcaccagacgagcatgacgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGCTCATTTGGAACGTCAGTTC 669 181 1894 Antisense
ACGTCAGTTCCAGTCTCAATCAGAT 170 95 1909 Antisense
CTGCTCCAACACAGATCATTTTGTG 139 237 1958 Antisense
GATTGCTGCAAATATCGCACTCATA 667 433 2077 Antisense
AAGAACACATTCTACTCACCATTGG 357 153 2117 Antisense
ACTCACCATTGGAAATCTCCACCGC 549 99 2130 Antisense
TCATAAGATTCGCCCATACAGCTCG 422 619 2158 Antisense
TACAGCTCGGTAGACTCATCTGCGG 416 643 2174 Antisense
GCGGAGTGGCAGTCAAACAGCAGTG 622 293 2195 Antisense
GCAGTGAAGGTATCGTCTCACCAGA 329 311 2214 Antisense
GTCTCACCAGACGAGCATGACGAAT 532 469 2228 Antisense
Sequence Source Affymetrix Proprietary Database