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[173582_at]

Description CEK093BZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14H10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69868 /WB_GENE_ID=C14H10.2 /WP=CE23543 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk93b12 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 70      6grp_total > 03      4grp_total > 60      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 96.5
(-3)
P 		108.1
(-0.1)
P 		120.9
(3)
P 		99.5
(-2.3)
A 		24
B 135.4
(2.7)
P 		140.8
(3)
P 		116.8
(1.6)
P 		39.3
(-3)
A 		102
C 132.5
(2.6)
P 		136.2
(3)
P 		133.2
(2.7)
P 		78.6
(-3)
A 		58
avr 121.5
(2.3) 		128.4
(3) 		123.6
(2.5) 		72.5
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 114
(-1.4)
P 		126.4
(-1)
P 		173.8
(0.6)
P 		246.2
(3)
P 		169
(0.4)
P 		64.7
(-3)
A 		182
B 137.1
(1.4)
P 		159.8
(2.3)
P 		114.5
(0.5)
P 		147.6
(1.9)
P 		176.2
(3)
P 		26.6
(-3)
P 		150
C 283.2
(3)
P 		178
(0.1)
P 		139
(-1)
P 		178.9
(0.1)
P 		162.2
(-0.4)
P 		67.9
(-3)
P 		215
avr 178.1
(2.4) 		154.7
(1.4) 		142.4
(0.9) 		190.9
(3) 		169.1
(2.1) 		53.1
(-3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 35.1
(3)
P 		23.5
(-0.4)
P 		31.6
(2)
P 		14.6
(-3)
A 		21
B 43.2
(3)
P 		34.8
(1.6)
P 		27.1
(0.2)
P 		8.4
(-3)
A 		35
C 43.9
(2.5)
P 		39.2
(1.7)
P 		46.4
(3)
P 		13.3
(-3)
A 		33
avr 40.7
(3) 		32.5
(1.3) 		35
(1.8) 		12.1
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 21
(-2.3)
P 		45
(0.8)
P 		37.8
(-0.2)
P 		62.4
(3)
P 		51
(1.5)
P 		15.8
(-3)
A 		47
B 47.7
(0.7)
P 		53.2
(1.2)
P 		27.8
(-1.3)
P 		39.1
(-0.2)
P 		71.6
(3)
P 		9.9
(-3)
P 		62
C 105
(3)
P 		54.3
(-0.7)
P 		35.4
(-2.1)
P 		36
(-2)
P 		52.5
(-0.8)
P 		22.7
(-3)
P 		82
avr 57.9
(2.9) 		50.8
(1.9) 		33.7
(-0.5) 		45.8
(1.2) 		58.4
(3) 		16.1
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25929
Sequence Type Exemplar sequence
Representative Public ID CEK093BZF NCBI
Target Description CEK093BZF /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C14H10.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D69868 /WB_GENE_ID=C14H10.2 /WP=CE23543 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk93b12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077320 NCBI Caenorhabditis elegans C14H10.2 (C14H10.2) mRNA, complete cds. 11/11 None
C14H10.2 ENSEMBL cdna:known chromosome:CEL140:X:10242261:10251283:-1 gene:C14H10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10242288-10251284(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14H10.2
Entrez Gene 181234 Entrez gene
SwissProt Q18350 EMBL-EBI
WormBase CE23543 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90738 Hypothetical protein C14H10.2 [Caenorhabditis elegans] emb|CAA89023.2| Hypothetical protein C14H10.2 [Caenorhabditis elegans] ref|NP_509721.1| C14H10.2 [Caenorhabditis elegans] 0.0
blast CAE70551 Hypothetical protein CBG17195 [Caenorhabditis briggsae] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 6.0E-21
Sequence
Target Sequence 
>C. ELEGANS:173582_AT
gagcatgacgaatagacaattttgatatccaatatgtgcaatttctaatttatgacacct
ccttctcctcctcatcccacatctttcattgaattccatttacttttctttttggaaata
ttatcaatttttcgattatgattctaaaatattttcaactcccgagagttttttttctta
agttctattttcaccaatatcgggaagcatttattggaatgcagcaactcacttattcat
acttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATGACGAATAGACAATTTTGA 523 389 2240 Antisense
GATATCCAATATGTGCAATTTCTAA 52 427 2263 Antisense
TTCTAATTTATGACACCTCCTTCTC 391 689 2282 Antisense
CTCATCCCACATCTTTCATTGAATT 576 229 2310 Antisense
CCCACATCTTTCATTGAATTCCATT 120 259 2315 Antisense
TGAATTCCATTTACTTTTCTTTTTG 36 577 2329 Antisense
TCAATTTTTCGATTATGATTCTAAA 111 629 2363 Antisense
TAAAATATTTTCAACTCCCGAGAGT 545 639 2384 Antisense
TTTCTTAAGTTCTATTTTCACCAAT 26 671 2413 Antisense
ATTTTCACCAATATCGGGAAGCATT 561 13 2426 Antisense
GCAGCAACTCACTTATTCATACTTT 616 313 2460 Antisense
Sequence Source Affymetrix Proprietary Database