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[173579_s_at]

Description CEK020E5R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W04G3.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32716 /WB_GENE_ID=W04G3.2 /WP=CE03786 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      6grp_highest_nonorm > 32      6grp_total > 91      4grp_total > 49      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2233
1 2 3 4 range
A 25
(-3)
A 		1985.5
(3)
P 		1870.3
(2.6)
P 		19.5
(-3)
A 		1966
B 15.9
(-3)
A 		2236.5
(3)
P 		1955.1
(2.2)
P 		58.1
(-2.9)
A 		2221
C 15.5
(-3)
A 		1936.4
(3)
P 		1901.8
(2.9)
P 		3.3
(-3)
A 		1933
avr 18.8
(-3) 		2052.8
(3) 		1909.1
(2.6) 		27
(-3) 		2034

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1564
1 2 3 4 5 6 range
A 1440
(1.7)
P 		1198.7
(0.7)
P 		1063.8
(0.1)
P 		1726.3
(3)
P 		1345.1
(1.3)
P 		365
(-3)
P 		1361
B 1450.5
(1.4)
P 		1278.7
(0.8)
P 		1197.2
(0.4)
P 		1855.2
(3)
P 		1161.6
(0.3)
P 		315.9
(-3)
P 		1539
C 1613.4
(3)
P 		1223.9
(1.2)
P 		1212.6
(1.2)
P 		1593
(2.9)
P 		1563.2
(2.8)
P 		291.3
(-3)
P 		1322
avr 1501.3
(2) 		1233.8
(0.9) 		1157.9
(0.6) 		1724.8
(3) 		1356.6
(1.4) 		324.1
(-3) 		1401
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 662
1 2 3 4 range
A 9.1
(-2.9)
A 		431
(2.3)
P 		488.9
(3)
P 		2.9
(-3)
A 		486
B 5.1
(-3)
A 		552.4
(3)
P 		453
(1.9)
P 		12.4
(-2.9)
A 		547
C 5.1
(-3)
A 		556.7
(2)
P 		662.8
(3)
P 		0.6
(-3)
A 		662
avr 6.4
(-3) 		513.4
(2.8) 		534.9
(3) 		5.3
(-3) 		530

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 265.5
(0)
P 		426.3
(2.8)
P 		231.7
(-0.5)
P 		437.8
(3)
P 		405.9
(2.5)
P 		88.9
(-3)
P 		349
B 504.7
(3)
P 		425.6
(1.8)
P 		290.7
(-0.3)
P 		491.4
(2.8)
P 		471.9
(2.5)
P 		117.8
(-3)
P 		387
C 598
(3)
P 		373.4
(0.3)
P 		308.6
(-0.5)
P 		320.4
(-0.3)
P 		505.8
(1.9)
P 		97.5
(-3)
P 		501
avr 456.1
(2.9) 		408.4
(2.1) 		277
(-0.1) 		416.5
(2.3) 		461.2
(3) 		101.4
(-3) 		360
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173579_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25872
Sequence Type Exemplar sequence
Representative Public ID CEK020E5R NCBI
Target Description CEK020E5R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=W04G3.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D32716 /WB_GENE_ID=W04G3.2 /WP=CE03786 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk20e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077450 NCBI Caenorhabditis elegans W04G3.2 (W04G3.2) mRNA, complete cds. 11/11 None
SNAP00000042821 ENSEMBL cdna:SNAP chromosome:CEL140:X:11062178:11064122:1 11/11 None
GENEFINDER00000042832 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11062178:11064122:1 11/11 None
W04G3.2 ENSEMBL cdna:known chromosome:CEL140:X:11062054:11064458:1 gene:W04G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11062178-11064123(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G3.2
Entrez Gene 181297 Entrez gene
SwissProt Q23163 EMBL-EBI
WormBase CE03786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92024 Hypothetical protein W04G3.2 [Caenorhabditis elegans] ref|NP_509851.1| W04G3.2 [Caenorhabditis elegans] 0.0
blast CAE70758 Hypothetical protein CBG17507 [Caenorhabditis briggsae] 0.0
blast CAA92025 Hypothetical protein W04G3.3 [Caenorhabditis elegans] ref|NP_509852.2| W04G3.3 [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:173579_S_AT
aatctgccgccatcagcagcaatcttgaaatgattcaagatcttatcatcaagccaaact
ctccactatgcacacaaaaaccaatcccggttgaatttgaactcgatcctcttatgggac
aatggtaccaagttatctactctccaccagtatctactggcccttgcagcatggtttctt
acaaaaaacttagtgataatggagaaggcaccggatcaatcgtagatgtctatgagtaca
caactgatggaactccatatggaaagccaataatctcttctggatatgccttggtgaaag
gaaagggagaactcatcttcagaacaaattccaacaaagaagatgtgactgtgcacattc
ttagcgttggaccattgaatcatcagggagaatatgaatatgttgtcatgtccaccaact
gcaactatccagtctatgtatttgcaagagatactagcattttcaagcaggaatacgaac
cagttgtcaatgagttcctggacaagagcggaattgtgaatggaatctctcgcctgctta
atgttgttgctccagtcgacaacactatgtgcatcttcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTGCCGCCATCAGCAGCAATCT 264 169 1099 Antisense
TCTTATCATCAAGCCAAACTCTCCA 673 613 1139 Antisense
TATGCACACAAAAACCAATCCCGGT 473 657 1165 Antisense
GAATTTGAACTCGATCCTCTTATGG 627 323 1191 Antisense
GGTACCAAGTTATCTACTCTCCACC 572 503 1222 Antisense
TCCACCAGTATCTACTGGCCCTTGC 634 555 1241 Antisense
TGTGCACATTCTTAGCGTTGGACCA 39 557 1448 Antisense
GTTGTCATGTCCACCAACTGCAACT 418 437 1500 Antisense
AATTGTGAATGGAATCTCTCGCCTG 521 179 1610 Antisense
CTCGCCTGCTTAATGTTGTTGCTCC 683 233 1627 Antisense
GACAACACTATGTGCATCTTCCCAC 3 367 1656 Antisense
Sequence Source Affymetrix Proprietary Database