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[173578_s_at]

Description CEK046D2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C33D9.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34470 /WB_GENE_ID=C33D9.3 /WP=CE03044 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 53      6grp_total > 64      4grp_total > 16      6grp_high1_sub > 03_04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2223
1 2 3 4 range
A 328.6
(-3)
P 		824.4
(-1.7)
P 		1211.1
(-0.6)
P 		2544.8
(3)
P 		2216
B 344
(-3)
P 		1040.4
(-1.1)
P 		1176.1
(-0.7)
P 		2495
(3)
P 		2151
C 322.3
(-3)
P 		1017.1
(-0.8)
P 		1122.7
(-0.4)
P 		2177.6
(3)
P 		1855
avr 331.6
(-3) 		960.6
(-1.2) 		1170
(-0.6) 		2405.8
(3) 		2074

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1298
1 2 3 4 5 6 range
A 201.5
(-3)
P 		883.2
(2.3)
P 		966.4
(3)
P 		848.5
(2.1)
P 		757.5
(1.4)
P 		936.3
(2.8)
P 		765
B 272.9
(-3)
P 		917.9
(0.6)
P 		1354.2
(3)
P 		1123.4
(1.7)
P 		680.1
(-0.7)
P 		1047.9
(1.3)
P 		1081
C 159.3
(-3)
P 		978.9
(0.8)
P 		1186.1
(1.7)
P 		1457.2
(3)
P 		594.3
(-1)
P 		1041.7
(1.1)
P 		1298
avr 211.2
(-3) 		926.7
(1.5) 		1168.9
(3) 		1143
(2.8) 		677.3
(-0.1) 		1008.6
(2) 		958
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 119.6
(-3)
P 		179
(-1.6)
P 		316.6
(1.7)
P 		372.5
(3)
P 		253
B 109.7
(-3)
P 		257
(-0.9)
P 		272.5
(-0.7)
P 		531.7
(3)
P 		422
C 106.7
(-3)
P 		292.4
(0.9)
P 		391.3
(3)
P 		367.2
(2.5)
P 		285
avr 112
(-3) 		242.8
(-0.5) 		326.8
(1.1) 		423.8
(3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 37.1
(-3)
P 		314.1
(3)
P 		210.5
(0.8)
P 		215.2
(0.9)
P 		228.6
(1.1)
P 		228
(1.1)
P 		277
B 95
(-3)
P 		305.5
(1.3)
P 		328.8
(1.7)
P 		297.5
(1.1)
P 		276.3
(0.7)
P 		390.7
(3)
P 		296
C 59
(-3)
P 		298.7
(2)
P 		301.9
(2)
P 		293
(1.8)
P 		192.3
(-0.2)
P 		348.7
(3)
P 		290
avr 63.7
(-3) 		306.1
(2.6) 		280.4
(2) 		268.6
(1.8) 		232.4
(0.9) 		322.5
(3) 		259
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173578_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24568
Sequence Type Exemplar sequence
Representative Public ID CEK046D2R NCBI
Target Description CEK046D2R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C33D9.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34470 /WB_GENE_ID=C33D9.3 /WP=CE03044 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027870 NCBI Caenorhabditis elegans C33D9.3a (C33D9.3) mRNA, complete cds. 11/11 None
C33D9.3a ENSEMBL cdna:known chromosome:CEL140:IV:8790720:8792872:-1 gene:C33D9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027871 6/11 Cross Hyb Matching Probes None
SNAP00000033374 6/11 Cross Hyb Matching Probes None
GENEFINDER00000033378 6/11 Cross Hyb Matching Probes None
C33D9.3b 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177691 2 1 NM_001027870 173578_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8790769-8793707(-) 100.0 100.0
Public Domain and Genome References
Ensembl C33D9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89732 Hypothetical protein C33D9.3a [Caenorhabditis elegans] ref|NP_001023041.1| C33D9.3a [Caenorhabditis elegans] 1.0E-146
blast T19680 hypothetical protein C33D9.3 - Caenorhabditis elegans 1.0E-144
blast CAD89733 Hypothetical protein C33D9.3b [Caenorhabditis elegans] ref|NP_001023042.1| C33D9.3b [Caenorhabditis elegans] 1.0E-143
Sequence
Target Sequence 
>C. ELEGANS:173578_S_AT
tcaacaccaacatttgcacttccatcgcctcctgtacctttgaaaagccctgaacctcaa
tattgtcatcagtccattgttgctccaacaagtgatttgacagagctcgccgagcagtta
attgctcgtttggcagcttgtgcaggcggactgcaacctacgttcccccgtgcattctgt
cggcaaaatggttgcaattggaaaaccagtgaaaataagttgtcatttgtaatattctgt
gttgttttagtggataatacgagccagtgtcatgctgttattttgtttttatttcaattc
ctttcaacaaaattcaatcagagctcgtttgcatcctacatttatcttagtaaaatatgt
actgcttgccctttcatagtgccattcagaaatccgtcagttcctttgtcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACACCAACATTTGCACTTCCAT 55 631 1235 Antisense
CCTCCTGTACCTTTGAAAAGCCCTG 68 263 1262 Antisense
AGCCCTGAACCTCAATATTGTCATC 117 83 1280 Antisense
ATTGTCATCAGTCCATTGTTGCTCC 125 5 1296 Antisense
CAAGTGATTTGACAGAGCTCGCCGA 74 185 1323 Antisense
TGCTCGTTTGGCAGCTTGTGCAGGC 475 581 1357 Antisense
ATACGAGCCAGTGTCATGCTGTTAT 92 23 1491 Antisense
TCAATCAGAGCTCGTTTGCATCCTA 483 633 1548 Antisense
TAAAATATGTACTGCTTGCCCTTTC 558 639 1585 Antisense
TGCCCTTTCATAGTGCCATTCAGAA 320 585 1601 Antisense
GAAATCCGTCAGTTCCTTTGTCGGA 527 361 1623 Antisense
Sequence Source Affymetrix Proprietary Database