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[173577_at]

Description CEK046B7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T18H9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34456 /WB_GENE_ID=T18H9.7 /WP=CE19588 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 86      6grp_total > 48      4grp_total > 12      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1392
1 2 3 4 range
A 1042.6
(-1.5)
P 		1179
(0.3)
P 		924.2
(-3)
P 		1390.9
(3)
P 		467
B 834
(-1.9)
P 		606.9
(-2.9)
P 		588.3
(-3)
P 		1980.1
(3)
P 		1392
C 951
(-0.1)
P 		617.3
(-3)
P 		617.9
(-3)
P 		1299.1
(3)
P 		682
avr 942.5
(-1.4) 		801.1
(-2.4) 		710.1
(-3) 		1556.7
(3) 		847

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 576
1 2 3 4 5 6 range
A 1154.4
(3)
P 		853.7
(-1.5)
P 		814.1
(-2.1)
P 		757.5
(-3)
P 		1093.4
(2.1)
P 		1078.3
(1.8)
P 		397
B 1039.7
(2.5)
P 		918.4
(1)
P 		578.8
(-3)
P 		887.1
(0.7)
P 		815.6
(-0.2)
P 		1083.3
(3)
P 		505
C 1047.3
(1.9)
P 		1022.9
(1.6)
P 		835.5
(-1)
P 		1122.7
(3)
P 		695.7
(-3)
P 		1097.1
(2.6)
P 		427
avr 1080.5
(2.9) 		931.7
(0.3) 		742.8
(-3) 		922.4
(0.1) 		868.2
(-0.8) 		1086.2
(3) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 379.6
(3)
P 		255.9
(-1.2)
P 		241.6
(-1.7)
P 		203.6
(-3)
P 		176
B 265.9
(-0.3)
P 		149.9
(-2.7)
P 		136.3
(-3)
P 		422
(3)
P 		286
C 314.8
(3)
P 		177.5
(-3)
P 		215.4
(-1.3)
P 		219
(-1.2)
P 		137
avr 320.1
(3) 		194.4
(-3) 		197.8
(-2.8) 		281.5
(1.2) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 212.8
(-1.6)
P 		303.6
(2)
P 		177.3
(-3)
P 		192.1
(-2.4)
P 		329.9
(3)
P 		262.5
(0.3)
P 		153
B 361.8
(2)
P 		305.7
(0.8)
P 		140.6
(-3)
P 		235
(-0.8)
P 		331.4
(1.3)
P 		404
(3)
P 		263
C 388.2
(3)
P 		312.1
(0.4)
P 		212.7
(-3)
P 		225.8
(-2.6)
P 		225.1
(-2.6)
P 		367.3
(2.3)
P 		176
avr 320.9
(2.2) 		307.1
(1.7) 		176.9
(-3) 		217.6
(-1.5) 		295.5
(1.2) 		344.6
(3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25222
Sequence Type Exemplar sequence
Representative Public ID CEK046B7R NCBI
Target Description CEK046B7R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T18H9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34456 /WB_GENE_ID=T18H9.7 /WP=CE19588 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk46b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072986 NCBI Caenorhabditis elegans T18H9.7a (T18H9.7) mRNA, complete cds. 11/11 None
T18H9.7a ENSEMBL cdna:known chromosome:CEL140:V:9216354:9219827:-1 gene:T18H9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179304 3 1 NM_072986 173577_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9216364-9219764(-) 100.0 100.0
Public Domain and Genome References
Ensembl T18H9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71873 Hypothetical protein T18H9.7a [Caenorhabditis elegans] ref|NP_505387.1| T18H9.7a [Caenorhabditis elegans] 0.0
blast NP_505388 T18H9.7b [Caenorhabditis elegans] 0.0
blast CAE72133 Hypothetical protein CBG19229 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173577_AT
gtctgcacagcttgatcgtttacattttgagtgtatctactcatgtcttccaatttcttt
ttatcatctctgtttcataatttacacctcaatctcgcttctattgatttgcctgtataa
tatgtaagtgttcccaaagtgtcgaatattaatctatttcttttttgttgctattctcta
tgttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGCACAGCTTGATCGTTTACAT 623 467 2411 Antisense
GCTTGATCGTTTACATTTTGAGTGT 445 305 2420 Antisense
AGTGTATCTACTCATGTCTTCCAAT 622 59 2440 Antisense
TGTATCTACTCATGTCTTCCAATTT 132 561 2442 Antisense
TTATCATCTCTGTTTCATAATTTAC 500 679 2471 Antisense
TCATAATTTACACCTCAATCTCGCT 47 607 2485 Antisense
ACACCTCAATCTCGCTTCTATTGAT 698 109 2494 Antisense
TCGCTTCTATTGATTTGCCTGTATA 221 601 2505 Antisense
ATATGTAAGTGTTCCCAAAGTGTCG 204 19 2530 Antisense
ATTTCTTTTTTGTTGCTATTCTCTA 213 17 2566 Antisense
TTTTTGTTGCTATTCTCTATGTTAA 304 675 2572 Antisense
Sequence Source Affymetrix Proprietary Database