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[173576_at]

Description CEK027E1R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK180.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33190 /WB_GENE_ID=ZK180.5 /WP=CE28179 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 24      6grp_total > 10      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7246
1 2 3 4 range
A 57.3
(-3)
P 		6139.2
(2.9)
P 		6233.2
(3)
P 		213.4
(-2.8)
P 		6176
B 79.3
(-3)
P 		6884.6
(3)
P 		5914.7
(2.1)
P 		326.2
(-2.8)
P 		6805
C 76.6
(-3)
P 		6612.8
(2.4)
P 		7303.7
(3)
P 		257
(-2.9)
P 		7227
avr 71.1
(-3) 		6545.5
(3) 		6483.9
(2.9) 		265.5
(-2.8) 		6474

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3222
1 2 3 4 5 6 range
A 2009
(-3)
P 		5117.9
(3)
P 		3363.9
(-0.4)
P 		2226.3
(-2.6)
P 		3177.6
(-0.7)
P 		2562.6
(-1.9)
P 		3109
B 2224.8
(-2.3)
P 		4795.2
(3)
P 		3537.5
(0.4)
P 		3229.6
(-0.2)
P 		1895.6
(-3)
P 		2465.8
(-1.8)
P 		2900
C 2036.7
(-3)
P 		4212.5
(3)
P 		3666.2
(1.5)
P 		2351.6
(-2.1)
P 		3320.3
(0.5)
P 		2192.6
(-2.6)
P 		2176
avr 2090.2
(-3) 		4708.5
(3) 		3522.5
(0.3) 		2602.5
(-1.8) 		2797.8
(-1.4) 		2407
(-2.3) 		2618
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2525
1 2 3 4 range
A 20.9
(-3)
P 		1332.6
(1.9)
P 		1629.5
(3)
P 		31.2
(-3)
P 		1609
B 25.3
(-3)
P 		1700.3
(3)
P 		1370.6
(1.8)
P 		69.5
(-2.8)
P 		1675
C 25.4
(-3)
P 		1901.2
(1.5)
P 		2545.6
(3)
P 		43.3
(-3)
P 		2520
avr 23.9
(-3) 		1644.7
(2.3) 		1848.6
(3) 		48
(-2.9) 		1825

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1450
1 2 3 4 5 6 range
A 370.3
(-3)
P 		1820.2
(3)
P 		732.6
(-1.5)
P 		564.6
(-2.2)
P 		958.9
(-0.6)
P 		623.9
(-2)
P 		1450
B 774.1
(-3)
P 		1596.1
(3)
P 		859
(-2.4)
P 		855.4
(-2.4)
P 		770.1
(-3)
P 		919.5
(-1.9)
P 		826
C 754.9
(-0.9)
P 		1285.4
(3)
P 		933.1
(0.4)
P 		472.9
(-3)
P 		1074.4
(1.4)
P 		734
(-1.1)
P 		813
avr 633.1
(-3) 		1567.2
(3) 		841.6
(-1.7) 		631
(-3) 		934.5
(-1.1) 		759.1
(-2.2) 		936
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25016
Sequence Type Exemplar sequence
Representative Public ID CEK027E1R NCBI
Target Description CEK027E1R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZK180.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D33190 /WB_GENE_ID=ZK180.5 /WP=CE28179 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171905(11), NM_171906(11), NM_171321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171905 NCBI Caenorhabditis elegans ZK180.5b (ZK180.5) mRNA, complete cds. 11/11 None
NM_171906 NCBI Caenorhabditis elegans ZK180.5c (ZK180.5) mRNA, complete cds. 11/11 None
NM_171321 NCBI Caenorhabditis elegans ZK180.5a (ZK180.5) mRNA, complete cds. 11/11 None
ZK180.5b.2 ENSEMBL cdna:known chromosome:CEL140:IV:4514872:4517117:-1 gene:ZK180.5 11/11 A 
ZK180.5c ENSEMBL cdna:known chromosome:CEL140:IV:4515046:4517162:-1 gene:ZK180.5 11/11 None
ZK180.5a ENSEMBL cdna:known chromosome:CEL140:IV:4515049:4517117:-1 gene:ZK180.5 11/11 A 
ZK180.5b.1 ENSEMBL cdna:known chromosome:CEL140:IV:4515049:4517117:-1 gene:ZK180.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4515062-4517124(-) 98.61 100.0
Public Domain and Genome References
Ensembl ZK180.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97987 Hypothetical protein ZK180.5c [Caenorhabditis elegans] ref|NP_741379.2| ZK180.5c [Caenorhabditis elegans] 6.0E-70
blast AAB52969 Hypothetical protein ZK180.5a [Caenorhabditis elegans] ref|NP_741377.2| ZK180.5a [Caenorhabditis elegans] 1.0E-43
blast AAM97986 Hypothetical protein ZK180.5b [Caenorhabditis elegans] ref|NP_741378.1| ZK180.5b [Caenorhabditis elegans] 3.0E-43
blast AAB52969 Hypothetical protein ZK180.5a [Caenorhabditis elegans] ref|NP_741377.2| ZK180.5a [Caenorhabditis elegans] 1.0E-37
blast AAM97986 Hypothetical protein ZK180.5b [Caenorhabditis elegans] ref|NP_741378.1| ZK180.5b [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:173576_AT
ccattgctctgatctcgttttgattgttcgccaacaaccaccctcgacaaatctgctcaa
aacatcacaaaattctcgtcttttttttgcctcgttctttcctttgtctgtatatactgt
tgccttattttatttctcttatatatattttattatgtcattttcgtgagtagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTGCTCTGATCTCGTTTTGATT 180 271 1671 Antisense
GATCTCGTTTTGATTGTTCGCCAAC 332 417 1681 Antisense
TTTGATTGTTCGCCAACAACCACCC 250 663 1689 Antisense
CACCCTCGACAAATCTGCTCAAAAC 362 201 1709 Antisense
GACAAATCTGCTCAAAACATCACAA 673 365 1716 Antisense
ACATCACAAAATTCTCGTCTTTTTT 569 105 1732 Antisense
TCGTTCTTTCCTTTGTCTGTATATA 686 603 1762 Antisense
GTCTGTATATACTGTTGCCTTATTT 678 471 1776 Antisense
ACTGTTGCCTTATTTTATTTCTCTT 637 97 1786 Antisense
GCCTTATTTTATTTCTCTTATATAT 35 283 1792 Antisense
TATTATGTCATTTTCGTGAGTAGTA 539 663 1821 Antisense
Sequence Source Affymetrix Proprietary Database